feat: classify Zotero research snapshot - #9
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Add a bounded read-only Local API intake that proposes evidence-backed dispositions, links child records, and surfaces reversible duplicate candidates without mutating Zotero. Signed-off-by: Seongho Bae <me@seonghobae.me>
📝 WalkthroughWalkthrough새 ChangesZotero 연구 수집 및 분류
Estimated code review effort: 4 (Complex) | ~45 minutes Merge Risk: 🟡 Moderate · up to Large snapshots can exhaust resources, reports can accidentally enter version control, and generated review data can lose required provenance or duplicate matches. These issues should be corrected before merge. Sequence Diagram(s)sequenceDiagram
participant Steward
participant ZoteroLocalAPI
participant conceptweave-zotero
participant LocalJSONReport
Steward->>conceptweave-zotero: 출력 경로로 CLI 실행
conceptweave-zotero->>ZoteroLocalAPI: 버전 헤더가 있는 페이지 요청
ZoteroLocalAPI-->>conceptweave-zotero: 항목 페이지 반환
conceptweave-zotero->>conceptweave-zotero: 스냅샷 검증 및 항목 분류
conceptweave-zotero->>LocalJSONReport: 제안과 증거를 JSON으로 저장
Steward->>LocalJSONReport: 처분 제안과 중복 후보 검토
🚥 Pre-merge checks | ✅ 3 | ❌ 2❌ Failed checks (2 warnings)
✅ Passed checks (3 passed)
Full details: Docstring CoverageExplanation Docstring coverage is 57.89% which is insufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 19 functions across 2 files. (10 skipped: 10 unsupported.)
✨ Finishing Touches 💡 1📝 Generate docstrings 💡
🧪 Generate unit tests (beta)
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Prevent ontology abbreviations from matching inside unrelated words and refresh the live aggregate baseline from the corrected report. Signed-off-by: Seongho Bae <me@seonghobae.me>
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Actionable comments posted: 4
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Inline comments:
In `@crates/conceptweave-zotero/src/lib.rs`:
- Around line 107-109: ClassifiedItem에 결정적인 abstention_reason 필드를 추가하고,
NeedsStewardReview를 생성하는 모든 경로에서 빈 메타데이터·지원되지 않는 내용·결정적 규칙 미일치 사유를 구분해 설정하십시오.
기존 proposed_disposition 및 evidence 동작은 유지하고, 연구 수집 계약에 따라 해당 사유가 결과에 보존되도록 하십시오.
- Around line 462-464: Update the DOI normalization prefix handling in the
visible strip_prefix chain to also remove both http://dx.doi.org/ and
https://dx.doi.org/ prefixes, preserving the existing normalization behavior for
bare DOI values and current doi.org forms.
In `@docs/adr/0006-zotero-research-intake.md`:
- Line 12: Restrict report output paths to locations outside the repository
before any File::create call, rejecting repository-internal paths and symlinks
that resolve into the repository. If the intended policy is to allow only /tmp,
explicitly document and enforce that policy in the CLI validation flow.
In `@docs/TRD.md`:
- Line 62: read_local_snapshot에 전체 스냅샷의 item 수와 응답 바이트 누적 상한을 추가하세요. 다음 요청을 보내기
전과 page를 items에 extend하기 전에 예산 초과 여부를 검사하고, 초과 시 ReadError로 즉시 종료하세요. 페이지 단위 제한과
기존 Total-Results 제어는 유지하세요.
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⛔ Files ignored due to path filters (1)
Cargo.lockis excluded by!**/*.lock
📒 Files selected for processing (12)
Cargo.tomlREADME.mdcrates/conceptweave-zotero/Cargo.tomlcrates/conceptweave-zotero/src/lib.rscrates/conceptweave-zotero/src/main.rsdocs/PRD.mddocs/TRD.mddocs/UML.mddocs/adr/0006-zotero-research-intake.mddocs/adr/README.mddocs/doctoring/RESEARCH_CAPABILITY_TRACEABILITY.mddocs/product-technical-gap-baseline.md
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Keep the runnable example aligned with the reviewed output confinement on macOS and other supported systems. Signed-off-by: Seongho Bae <me@seonghobae.me>
Accept both canonical temp roots on macOS, preserve create-new confinement, cover all budget edges, and deduplicate coverage by source coordinates across test binaries. Signed-off-by: Seongho Bae <me@seonghobae.me>
Signed-off-by: Seongho Bae <me@seonghobae.me>
1 participant
September 6 complete metadata inventory checkpoint
Current OPEN Draft head:
51c7df6d03f072449422fd58ca24b2f9d6026f07, normally pushed while preserving priorf8566408e6a3017cf775fadf2a2f7e50b2d20dc6and Foundation baseb538470c963e6524ddc0c3f652a46a4fc8265150. Runtime source is1e95d6eb979e66ecb7dae4f81f18a6b0a91b7624.Committed inventory RED
48dcd0d→ GREEN220f697→ adjacency-consumption simplification48c3525preserves all nonbibliographic metadata and derives pending standalone/orphan/cyclic ancestry. Existing bibliographic proposals and duplicate candidates are unchanged. Independent producer review at48c3525reran the three focused tests and identified the related blank-key admission gap. Isolated RED3a57f3b→ shared-reader fix1e95d6erejects blank source identity before another page without rewriting valid keys.Fresh exact documentation-head verification: 47 tests / 10 unfiltered suites, including two doctests; unchanged source passed strict Clippy, rustdoc, release and existing coverage gate: 123/123 functions, 751/751 normalized regions, 114/114 normalized branches. Raw LLVM remains 1,231/1,232 lines, 1,985/1,993 regions and 113/114 branches, not 100%.
The actual
48c3525executable read the genuine library in 17.61 seconds: 8,326 records = 3,715 unchanged bibliographic proposals + 4,611 other metadata records; pending keys exactly match the previously audited three standalone PDFs and one note. This run predates the later blank-key guard; it is not a final-executable replay or a performance benchmark. Exact evidence and consumer integration map.Both inventory fields still require downstream restoration/identity/digest validation and full-library reconciliation before adoption. An empty pending list is only parent-link accounting, never approval or completion. Full-text captures are not rewritten; metadata projection is not lossless original text. Current native Visual Inspection was attempted but the Mac is locked; no new screenshot or visual pass is claimed. Existing real paper decisions/independent approvals remain 0/3,715 plus four unresolved sources. No model, Zotero write, approval, protected merge, thread resolution or closure. Historical checkpoints below retain their earlier heads.
September 6 item-revision and live-read checkpoint
Current OPEN Draft head:
f8566408e6a3017cf775fadf2a2f7e50b2d20dc6, normally pushed overbb2facc; Foundation base remainsb538470c963e6524ddc0c3f652a46a4fc8265150.Committed RED
1cf3472499ad49716a70603be2e15dc857819231reproduces acceptance of a metadata item newer than its page's library version. Source GREEN8effa6a9b15ac1a09b7e80dab4cf2885fad02211rejects any such member before accumulation through the shared reader and existing snapshot error; it neither filters records nor clamps revisions. Fresh pre-push locked Rust 1.98.0 execution: 43 tests / 10 unfiltered suites, including two doctests. Strict source tooling and the unchanged normalized coverage gate passed; raw LLVM is not 100%.The rebuilt binary also completed a real Zotero 10.0.1/API3/schema44/library2 read in 26.29 s, observing 8,326 records / 3,715 bibliographic proposals. A separate live/visual audit found three standalone PDFs and one standalone note outside the worksheet. The native screenshot showed 3,719 selected top-level records and a retraction warning. Scope reconciliation and retraction evidence are new open requirements, not an implemented completion gate or approved labels.
This new revision guard has not yet been propagated through the dependent research stack. Earlier deadline propagation is separate. Current-head independent review, required hosted checks and protected integration remain outstanding; CodeRabbit Draft skip is not approval. No source mutation, model call, review resolution, self-approval or PR closure occurred. Historical checkpoints below retain their original heads.
Outcome
Implements the first executable Issue #8 slice: Rust-first read-only Zotero Local API intake, one immutable library-version snapshot, exactly one evidence-bound proposal per top-level bibliographic record, child note/attachment linkage, and reversible DOI/title duplicate candidates. It has no Zotero mutation path.
Current exact stack — 2026-09-05
b538470c963e6524ddc0c3f652a46a4fc8265150;a2a84884f67dcac6f6892c958d55450aea6d6c88;256076d12dec80997960b1db89bec0809f129c90and all its semantic deltas remain ancestors;31b507ae9feaf58688cf62ddcb597a88d2223366reproduces proxy forwarding and exact 8 MiB rejection; GREEN adds proxy isolation and one shared strict UTF-8 inclusive reader, without importing later feature deltas;Evidence and governance boundary
The historical read-only local campaign recorded in this PR observed Zotero 9.0.6 / Local API v3 / schema 42 at library version
12341, 8,326 records and 3,715 top-level bibliographic proposals: 3,658 conservative steward-review abstentions, 56 adjacent-evidence proposals, one semantic-consumption bridge and 49 reversible duplicate groups. These remain candidate observations, not governed semantic truth.Current source preserves deterministic abstention reasons, exact matched evidence, conservative multi-family abstention, normalized DOI identity, bounded immutable pagination, response/API/schema/version/server consistency checks, complete-snapshot row/byte budgets, source-snapshot content binding, duplicate-key rejection, and the Zotero external-SoR ACL.
Merge gate
Keep Draft until Foundation is independently integrated and one unchanged exact #9 head has terminal Product/security/SAST/dependency/review evidence with zero valid unresolved findings. No self-approval, routine admin bypass, force-push, destructive rebase, mutable foreign dependency, predecessor-evidence transfer, Zotero mutation, or promotion of local candidate counts to semantic authority.
Refs #8.
Owner-local transport verification
At
a2a84884f67dcac6f6892c958d55450aea6d6c88, Rust 1.98.0 workspace tests (38 including doctests), strict Clippy, formatting and the existing coverage gate pass. Synthetic HTTP tests exercise six proxy-variable spellings, exactly 8 MiB acceptance and oversized/invalid UTF-8/truncated rejection; no real Zotero, credentials or write was used. Independent local recheck reran all four metadata-transport tests before the fast-forward push.Source-normalized coverage: regions 686/686 and branch outcomes 90/90. Raw LLVM: functions 97/97, lines 981/982, branches 89/90; raw coverage is not 100%. No exclusions or protection requirements were added/weakened. Local results are not hosted check or independent approval evidence.
Latest owner-local deadline checkpoint — 2026-09-06
Exact head
bb2faccfda9efed55b6759f1bbf7907bf6ec0c3b; base #1b538470c963e6524ddc0c3f652a46a4fc8265150. This supersedes the earlier head checkpoint, not its retained history. REDaff539fe8595a240d2da85da1a7a235dd55455e0reproduces an accepted slow-drip report; GREENe6b2a2214b39106ddacc753595b72a699d53d04fadds the stdlib monotonic five-minute admission/completion budget at the shared metadata reader. Three regression functions cover six rejection boundaries and timely empty/short-page success. In-flight calls keep their existing request limits; no hard cancellation or peer authentication is claimed.Final head: 41 tests / 10 unfiltered suites / two doctests, formatting and existing CI contract pass. Source-identical GREEN also passed strict Clippy, warnings-denied rustdoc, release build and unchanged coverage: 108/108 functions, 703/703 normalized regions, 100/100 normalized branches; raw LLVM 1051/1052 lines, 1600/1606 regions, 99/100 branches. See
docs/doctoring/zotero_metadata_deadline.md. TRD now describes present/stable API-v3 schema evidence instead of requiring schema 42.Normal forward propagation is required and in progress. Hosted checks, independent approval, other findings and protected integration remain separate gates. Draft preserved; no actual Zotero read, mutation, paper decision, dependency addition, self-approval or protection change.