glycoproteomics

pGlyco is a software tool dedicated for the analysis of intact glycopeptides/glycoproteins using mass spectrometry.

🐍 Open-Source Software for the semi-automated analysis of glycopeptide mass spectrometry data

A library for describing the structure of glycopeptides

Easy Install and Load the `Glycoverse`

This is a Java stand-alone tool for the quantitation of glyco sites. It calculates the proportion of different glyco-PTMs in a protein of interest. It supports data from IP2 (quant compare output files) and MaxQuant.

Glyco-omics data analysis pipelines.

3D implementation of The Symbol Nomenclature For Glycans (SNFG) for UCSF Chimera

Generate proteoforms from a list of glycopeptides.

Statistical analysis for glycomics and glycoproteomics data.

It assigns the phosphorylation site in protein

Systematic Quantification of Protein O-GlcNAcylation under N-Glycosylation Inhibition

Glycan-centric functional enrichment analysis for glycoproteomics data.

Data and code needed to recreate plots for manuscript doi.org/10.1021/jasms.2c00249.

Find glycopeptide peptide sequences in protein FASTA files.

Shared R helpers for Wu lab proteomics analysis: TMT normalization (SL + TMM), limma differential expression, and figure theming. Verified against published OGlycoTM output.

Read and process glycomics and glycoproteomics data

Managing glycoproteomics or glycomics data in a tidy way.

Tutorials for Glycoproteomic Data Analysis using R and Python.

Visualization for everything in `glycoverse`!