[iskandr]

Summary

Record source-backed absence of TAP1 knockout on the two parental wild-type THP-1 arms and two primary human monocyte-derived macrophage arms in PMID 39438697. The paper's Figure 5 and acknowledgements distinguish the parental WT line from the TAP1 knockout line and describe the primary hMDM experiment. The authors' conditions table names the four THP-1 WT/KO × mock/H37Rv runs explicitly.

The four condition_knockout_genes: "none" claims remove only PMID 39438697's four known engineering_drift_audit errors. The global baseline falls 59→55 findings, 43→39 errors, across 10→9 studies; warnings remain 16. Arm identities, infection states and observed data are unchanged. All four arms retain their prior unengineered verdict and expression-anchor tiers. Bump to 1.82.11.

Dependency

PR #717 is merged and published as Hitlist 1.82.10. This PR is based on main.

Verification

• ./format.sh and ./lint.sh pass.
• All 22 engineering-drift tests pass, including exact baseline equality.
• ./test.sh was attempted but its memory preflight refused at 1.00 GB free versus the required 2.5 GB. Final-head CI passes lint, the five-version unit matrix, corpus integration and coverage.

Refs #593.

[coveralls]

Coverage Report for CI Build 39316566296

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Coverage: 88.839%

Details

• Patch coverage: No coverable lines changed in this PR.

Uncovered Changes

No uncovered changes found.

Coverage Regressions

Requires a base build to compare against. How to fix this →

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Coverage Stats

Relevant Lines:	13977
Covered Lines:	12417
Line Coverage:	88.84%
Coverage Strength:	0.89 hits per line

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💛 - Coveralls