BSR-Based Allele Calling Algorithm
🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
Fast cgMLST/wgMLST allele caller with SIMD Smith-Waterman scoring (parasail) and an offline schema-side minimizer-overlap audit. 10.7–22.3× faster than chewBBACA with 100% DNA-sequence agreement on bilaterally callable cells.
A Platform for Epidemiological Investigation and Comparative Genomic Analysis
mlst2dist.py computes a distance matrix from a chewBBACA MLST alleles table, using Hamming Distance modified with correction for missing data
Genome-anchored calibration of a continuous phenotype across cohorts, with uncertainty-propagated probabilistic labels
Add a description, image, and links to the wgmlst topic page so that developers can more easily learn about it.
To associate your repository with the wgmlst topic, visit your repo's landing page and select "manage topics."