tripitakit / mlst2dist Star 2 Code Issues Pull requests mlst2dist.py computes a distance matrix from a chewBBACA MLST alleles table, using Hamming Distance modified with correction for missing data genomics mlst distance-calculation hamming-distance cgmlst distance-matrix wgmlst dissimilarity-matrix chewbbaca Updated Apr 19, 2022 Python
genpat-it / cgmlst-dists-rs Star 0 Code Issues Pull requests Ultra-fast SIMD (AVX-512) pairwise cgMLST Hamming distance matrix — Rust reimplementation of cgmlst-dists-py, byte-identical output, ~6x faster than the C cgmlst-dists rust bioinformatics genomics simd mlst hamming-distance cgmlst genomic-surveillance chewbbaca Updated Jul 22, 2026 Rust
cinnetcrash / Lgarvieae-cgMLST Star 0 Code Issues Pull requests Core genome MLST schema for Lactococcus garvieae (chewBBACA-compatible, 1100 loci, built from 247 QC'd genomes) mlst cgmlst aquaculture genomic-epidemiology chewbbaca bacterial-typing lactococcus-garvieae Updated Aug 3, 2026 HTML