Issues

• Allow pinned dated Ensembl annotations in gene identity provenance

  pirl-unc/oncoref#609 · Filter by author iskandr opened on Oct 20, 2026

• Clarify CTA funnel labels and expose separate expression and curation decisions

  pirl-unc/oncoref#607 · Filter by author iskandr opened on Oct 20, 2026

• Restore verified linear expression for the legacy UNC NUTM source and rebuild dependent artifacts

  pirl-unc/oncoref#604 · Filter by author iskandr opened on Oct 20, 2026

• Curate mouse CTA evidence through the shared species API

  pirl-unc/oncoref#600 · Filter by author iskandr opened on Oct 16, 2026

• Expose common CTA restriction facts and reference mappings across species

  pirl-unc/oncoref#599 · Filter by author iskandr opened on Oct 16, 2026

• Add bounded cache retention across bundle versions, legacy roots, and per-cohort source matrices

  pirl-unc/oncoref#591 · Filter by author iskandr opened on Oct 13, 2026

• Consume the compact orfdata Pfizer canine proteomics artifact

  pirl-unc/oncoref#585 · Filter by author iskandr opened on Oct 12, 2026
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• Ruff 0.17 flags deliberate string-prefix formatting as path handling

  pirl-unc/oncoref#578 · Filter by author iskandr opened on Oct 12, 2026

• Generalize reference and normal/tumor expression data across species, starting with canine sources

  pirl-unc/oncoref#574 · Filter by author iskandr opened on Oct 9, 2026

• Own versioned HPA cancer IHC counts and RNA prevalence with explicit cancer crosswalk

  pirl-unc/oncoref#550 · Filter by author iskandr opened on Sep 23, 2026

• Audit mortality-burden site mapping for mixed CHOL and salivary head/neck cohorts

  pirl-unc/oncoref#543 · Filter by author iskandr opened on Sep 17, 2026

• Refresh world cancer burden to GLOBOCAN 2024 and populate raw-count provenance

  pirl-unc/oncoref#542 · Filter by author iskandr opened on Sep 17, 2026

• Audit every TMB, ICI and aPD1 number for source and population validity

  pirl-unc/oncoref#524 · Filter by author iskandr opened on Sep 16, 2026

• Configure PyPI trusted publisher for the release workflow

  pirl-unc/oncoref#371 · Filter by author iskandr opened on Jul 14, 2026
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