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Make mismatches easy to find and color mutation letters - #18

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iskandr merged 1 commit into
mainfrom
highlight-mutation-mismatches
Oct 10, 2026
Merged

iskandr merged 1 commit into
mainfrom
highlight-mutation-mismatches

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@iskandr

@iskandr iskandr commented Oct 10, 2026

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Make vaccine mismatches easy to find with a summary shortcut, visible Top mismatches / Any window controls, gene jump links, and compact per-region mismatch counts. Top mismatches retain the existing primary-window definition; diagnostic alternatives remain separate and do not change recovery scoring.

Render target amino acids as bold blue letters instead of underlines. A target residue that also differs from a vaccine peptide keeps blue text in a rose box. Frameshift tails use lighter-weight blue text; uncertain target locations retain dotted outlines. Update the legend, reading key, and README.

Validation: all 52 JavaScript tests and the site build pass. DOM checks verify the two primary mismatch targets, 18 diagnostic mismatch targets, jump links, combined search/sample filters, shortcut reset, combined mutation/mismatch marks, and removal of mutation underlines. The primary score remains 17/36. Browser screenshot verification was unavailable because this session had no connected browser surface.

@iskandr
iskandr merged commit 54219c7 into main Oct 10, 2026
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