Skip to content

Clarify peptide overlap labels and read quality evidence - #17

Merged
iskandr merged 1 commit into
mainfrom
clarify-peptide-overlap
Oct 9, 2026
Merged

iskandr merged 1 commit into
mainfrom
clarify-peptide-overlap

Conversation

@iskandr

@iskandr iskandr commented Oct 9, 2026

Copy link
Copy Markdown
Contributor

Replace the report’s ambiguous “unaligned” label with “No clear peptide overlap,” including the recovery table and per-window explanations. Explain the six-amino-acid placement rule and distinguish it from RNA-to-genome mapping. Widen the summary table to keep the longer label readable.

Document the available read-quality evidence and its limitations, including the ABI3BP example, restricted-reference remapping, and synthetic Q30 values. Ranking and recovery counts remain unchanged: 17/36 primary recoveries and 25/36 across all outputs.

Validation: all 52 JavaScript tests pass; site build and diff checks pass; browser verification confirms the wording and table layout.

@iskandr
iskandr merged commit 1ee7262 into main Oct 9, 2026
1 check passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant