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Import anarci lazily so kasearch can be imported without it #4

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Import anarci lazily so kasearch can be imported without it #4

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4 changes: 3 additions & 1 deletion kasearch/anarci_numbering.py
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Original file line number Diff line number Diff line change
@@ -1,8 +1,10 @@
from anarci import anarci
from multiprocessing import Pool
from functools import partial

def _number_chunk(sequences, scheme="imgt", database="ALL", allow=set(["H","K","L"]), allowed_species=['human','mouse'], strict = True, **kwargs):
# Imported lazily so `import kasearch` does not require anarci (which depends on the CC-licensed IMGT
# germline database). Only needed when KA-Search's own ANARCI numbering path is actually used.
from anarci import anarci
try:
numbered, _, _ = anarci(list(enumerate(sequences)), scheme=scheme, database=database, allow=allow, allowed_species=allowed_species, **kwargs)
numbered = [x[0][0] if x else None for x in numbered]
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