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7 changes: 6 additions & 1 deletion .github/workflows/fetch-and-ingest-branch.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,8 @@ jobs:
runtime: aws-batch
env: |
NEXTSTRAIN_DOCKER_IMAGE: ${{ inputs.image }}
GITHUB_RUN_ID: ${{ github.run_id }}
SLACK_CHANNELS: ${{ vars.TEST_SLACK_CHANNEL }}
UPLOAD_CONFIG: ${{ needs.set_config_overrides.outputs.upload_config }}
run: |
nextstrain build \
Expand All @@ -44,6 +46,9 @@ jobs:
--memory 64gib \
--env AWS_ACCESS_KEY_ID \
--env AWS_SECRET_ACCESS_KEY \
--env GITHUB_RUN_ID \
--env SLACK_TOKEN \
--env SLACK_CHANNELS \
ingest \
--configfiles config/config.yaml config/optional.yaml \
--config trigger_rebuild=False send_slack_notifications=False upload="$UPLOAD_CONFIG"
--config trigger_rebuild=False send_slack_notifications=True upload="$UPLOAD_CONFIG"