Add nf-core/eager style ancient DNA (aDNA) analysis workflow#1234

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mertydn wants to merge 18 commits into

galaxyproject:mainfrom

mertydn:add-paleogenomics-adna-workflow

Commits on May 9, 2026

Add nf-core/eager style ancient DNA (aDNA) analysis workflow
mertydn
committed

Commits on May 19, 2026

Update Kraken2 database directory in workflow
mertydn
authored

Commits on Jul 6, 2026

fix: resolve multiqc collection crash and split PE reads into R1/R2 lists
mertydn
committed
fix: concatenate unmerged PE reads for single-end mapping to prevent data loss
mertydn
committed
fix: wire when condition for concatenate and update readme inputs
mertydn
committed
test: add paired-end workflow integration test case to planemo suite
mertydn
committed
fix: align workflow readme, add format constraints to PE inputs, and clean up naming consistency
mertydn
committed
Merge branch 'galaxyproject:main' into add-paleogenomics-adna-workflow
mertydn
authored
Change BED file type from bed.gz to bed
mertydn
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Update identifiers and file types in adna-analysis-tests.yml
mertydn
authored