Making code Dockstore compatible#3
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Jeltje wants to merge 7 commits into
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… internal version does not like long fasta lines when doing faidx; added option to input a gzipped genome to SomaticSniper.py; updated cwl to v1.0
buchanae
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Apr 4, 2017
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| RUN cd /opt/somatic-sniper-1.0.5.0 && mkdir build && cd build && cmake ../ && make deps && make -j && make install | ||
| RUN cp /opt/somatic-sniper-1.0.5.0/build/vendor/samtools/samtools /usr/bin/ | ||
| #RUN cp /opt/somatic-sniper-1.0.5.0/build/vendor/samtools/samtools /usr/bin/ |
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Please just delete lines instead of commenting them
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This PR includes the following changes:
cwlto make compatible with Dockstorejsonfile with publicly available data