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rpkg-ci image: set RSTUDIO_PANDOC so R Markdown vignettes build #1656

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Merged
d-morrison merged 2 commits into from
Nov 8, 2026
Merged

rpkg-ci image: set RSTUDIO_PANDOC so R Markdown vignettes build #1656

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rpkg-ci.def: set RSTUDIO_PANDOC so vignettes build
claude Nov 8, 2026
2645b0d
Merge main into claude/project-thread-ewd82d
claude Nov 8, 2026
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2 changes: 2 additions & 0 deletions changelog.d/rpkg-ci-pandoc.fixed.md
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@@ -0,0 +1,2 @@
- `condor-batch/image/rpkg-ci.def`: sets `RSTUDIO_PANDOC` to Quarto's bundled pandoc, so `R CMD build` can build R Markdown vignettes inside the image.
A cold `R CMD check` of rampp on a cluster node failed with "Pandoc is required to build R Markdown vignettes" until the variable was set by hand (gha#1640).
4 changes: 3 additions & 1 deletion condor-batch/image/rpkg-ci.def
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Expand Up @@ -2,7 +2,7 @@ Bootstrap: localimage
From: lds-ci.sif

# R-package CI image for condor-batch (gha#1640): R CMD check, covr and pkgdown
# on a cluster execute node. Built from lds-ci.sif so it shares R 4.5, Quarto and
# on a cluster execute node. Built from lds-ci.sif so it shares R, Quarto and
# TinyTeX. It adds the tools the r-lib workflows install and the system libraries
# the commonest package dependencies compile against.
#
Expand All @@ -20,6 +20,8 @@ From: lds-ci.sif
export R_LIBS_USER=${PWD}/.rlib
export R_REPOS_PPM="https://packagemanager.posit.co/cran/__linux__/noble/latest"
export _R_CHECK_FORCE_SUGGESTS_=false
# Quarto bundles pandoc off PATH; R CMD build needs it to build R Markdown vignettes.
export RSTUDIO_PANDOC=/opt/quarto/bin/tools/x86_64

%post
set -eux
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