Issues

• Evaluate sensitivity of subtype and SSP-ROR predictions to RNA-seq normalization

  enhancement
  JohanHartmanGroupBioteam/BreastSubtypeR#208 · Filter by author sifakise opened on Oct 24, 2026
  

• RORgroup(): validate proliferation gene coverage and non-finite ROR outputs

  bug
  JohanHartmanGroupBioteam/BreastSubtypeR#206 · Filter by author sifakise opened on Oct 24, 2026
  

• Modernize TCGA raw-count and OSLO normalized examples for complete SSP-ROR coverage

  enhancement
  JohanHartmanGroupBioteam/BreastSubtypeR#199 · Filter by author sifakise opened on Oct 23, 2026
  

• ROR-P and original ROR-PC omit reference per-sample proliferation standardization

  bug
  JohanHartmanGroupBioteam/BreastSubtypeR#198 · Filter by author sifakise opened on Oct 23, 2026
  

• Review cohort-level versus per-sample duplicate-gene resolution for SSP inputs

  JohanHartmanGroupBioteam/BreastSubtypeR#177 · Filter by author sifakise opened on Oct 20, 2026
  

• Scientific review: define exact-equality categories for original Parker-derived ROR groups

  JohanHartmanGroupBioteam/BreastSubtypeR#172 · Filter by author sifakise opened on Oct 19, 2026
  

• Review Spearman versus Pearson correlations in Prosigna-like ROR-PC

  JohanHartmanGroupBioteam/BreastSubtypeR#156 · Filter by author sifakise opened on Oct 16, 2026
  

• Normalize entropy for comparability across panels

  enhancement
  JohanHartmanGroupBioteam/BreastSubtypeR#132 · Filter by author sifakise opened on Jun 12, 2026
  

• Export RNA-seq ROR scores when running SSPBC models

  enhancement
  JohanHartmanGroupBioteam/BreastSubtypeR#131 · Filter by author sifakise opened on May 25, 2026
  1

  

• Validate method-specific input adequacy and AUTO exclusion

  enhancement
  JohanHartmanGroupBioteam/BreastSubtypeR#126 · Filter by author sifakise opened on Feb 16, 2026
  

• Extend functionality to support single-cell transcriptomic data (e.g., SCSubtype)

  enhancement
  JohanHartmanGroupBioteam/BreastSubtypeR#108 · Filter by author sifakise opened on Oct 14, 2025