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@JohanHartmanGroupBioteam

Johan Hartman Group – Bioinformatics & Machine Learning

Research code and software from the bioinformatics and machine learning team of Johan Hartman's group at Karolinska Institutet

Johan Hartman Group - Bioinformatics & Machine Learning

Research software and computational workflows | Karolinska Institutet

Johan Hartman's research group brings together clinicians, pathologists, and computational researchers working on breast cancer and precision pathology.

This GitHub organization is maintained primarily by the group's bioinformaticians and machine learning engineers. It serves as a platform for sharing research software, bioinformatics pipelines, machine learning code, and reproducible computational analyses.

Our work spans molecular subtyping, cancer genomics, spatial transcriptomics, computational pathology, and tumour heterogeneity.

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  1. BreastSubtypeR BreastSubtypeR Public

    Breast cancer intrinsic molecular subtyping with published classifiers, cohort-aware workflows, and a local Shiny app

    R 6 2

  2. BreastCancer_CTA BreastCancer_CTA Public

    R codes used for analysis of results from computational tissue annotation of breast cancer sample

    Jupyter Notebook 2 1

  3. BreastCancer_Multiregion BreastCancer_Multiregion Public

    Jupyter Notebook

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