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Merged
beckyjackson merged 2 commits into from
Mar 9, 2021
Merged

Update from master, add Patr alleles, sort #84

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71ed4f1
Update from master, add Patr alleles, sort
Mar 8, 2021
a60306e
Add IPD accession
beckyjackson Mar 9, 2021
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5 changes: 5 additions & 0 deletions Makefile
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Original file line number Diff line number Diff line change
Expand Up @@ -229,6 +229,11 @@ update-cow-alleles: src/update_cow_alleles.py ontology/chain-sequence.tsv ontolo
update-mamu-alleles: src/update_mamu_alleles.py ontology/chain-sequence.tsv ontology/chain.tsv ontology/molecule.tsv ontology/genetic-locus.tsv index.tsv build/mhc.fasta iedb/iedb.tsv
python3 $^

.PHONY: update-patr-alleles
update-patr-alleles: src/update_patr_alleles.py ontology/chain-sequence.tsv ontology/chain.tsv ontology/molecule.tsv ontology/genetic-locus.tsv index.tsv build/mhc.fasta iedb/iedb.tsv
python3 $^


### OWL Files

mro.owl: build/mro-import.owl index.tsv $(build_files) ontology/metadata.ttl | build/robot.jar
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260 changes: 260 additions & 0 deletions iedb/iedb.tsv
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Expand Up @@ -19639,3 +19639,263 @@ Mamu-B*057:04 protein complex 19731 B
Mamu-DQB1*17:11 protein complex 19732 DQ
Mamu-DRB*W021:04 protein complex 19733 DRB
Mamu-A1*004:08 protein complex 19734 A1
Patr-DRB1*03:06 protein complex 19735 DRB1
Patr-C*03:01 protein complex 19736 C
Patr-B*11:01 protein complex 19737 B
Patr-C*13:03 protein complex 19738 C
Patr-DPA1*01:03 protein complex 19739 DPA1
Patr-DRB1*03:10 protein complex 19740 DRB1
Patr-B*07:05 protein complex 19741 B
Patr-DRB3*07:05 protein complex 19742 DRB3
Patr-DRB3*07:01 protein complex 19743 DRB3
Patr-DRB1*03:01 protein complex 19744 DRB1
Patr-DRB3*02:09 protein complex 19745 DRB3
Patr-DPB1*03:03 protein complex 19746 DPB1
Patr-B*28:02 protein complex 19747 B
Patr-DPA1*01:06 protein complex 19748 DPA1
Patr-C*15:01 protein complex 19749 C
Patr-DRA*01:01 protein complex 19750 DRA
Patr-DRB5*03:06 protein complex 19751 DRB5
Patr-C*03:05 protein complex 19752 C
Patr-B*22:05 protein complex 19753 B
Patr-DRB5*03:04 protein complex 19754 DRB5
Patr-DRB1*03:03 protein complex 19755 DRB1
Patr-B*23:06 protein complex 19756 B
Patr-DRB4*02:01 protein complex 19757 DRB4
Patr-AL*01:04 protein complex 19758 AL
Patr-B*11:04 protein complex 19759 B
Patr-B*07:03 protein complex 19760 B
Patr-DRB3*02:15 protein complex 19761 DRB3
Patr-DRB1*02:01 protein complex 19762 DRB1
Patr-DRB1*03:14 protein complex 19763 DRB1
Patr-B*24:02 protein complex 19764 B
Patr-A*27:01 protein complex 19765 A
Patr-B*06:03 protein complex 19766 B
Patr-B*08:02 protein complex 19767 B
Patr-DPA1*01:04 protein complex 19768 DPA1
Patr-DRB3*02:10 protein complex 19769 DRB3
Patr-B*22:08 protein complex 19770 B
Patr-B*06:02 protein complex 19771 B
Patr-A*15:03 protein complex 19772 A
Patr-B*23:07 protein complex 19773 B
Patr-A*26:01 protein complex 19774 A
Patr-A*09:02 protein complex 19775 A
Patr-B*38:02 protein complex 19776 B
Patr-B*19:03 protein complex 19777 B
Patr-C*15:02 protein complex 19778 C
Patr-B*19:01 protein complex 19779 B
Patr-B*08:01 protein complex 19780 B
Patr-A*03:04 protein complex 19781 A
Patr-DPB1*01:05 protein complex 19782 DPB1
Patr-AL*01:01 protein complex 19783 AL
Patr-C*08:01 protein complex 19784 C
Patr-DPB1*01:01 protein complex 19785 DPB1
Patr-B*07:06 protein complex 19786 B
Patr-DQA1*05:01 protein complex 19787 DQ
Patr-DRB*W008:01 protein complex 19788 DRB
Patr-A*24:01 protein complex 19789 A
Patr-C*11:01 protein complex 19790 C
Patr-B*28:01 protein complex 19791 B
Patr-A*16:01 protein complex 19792 A
Patr-DPB1*01:06 protein complex 19793 DPB1
Patr-DRB1*03:13 protein complex 19794 DRB1
Patr-B*37:01 protein complex 19795 B
Patr-A*17:01 protein complex 19796 A
Patr-DQA1*20:02 protein complex 19797 DQ
Patr-C*03:07 protein complex 19798 C
Patr-DRB5*03:01 protein complex 19799 DRB5
Patr-A*17:03 protein complex 19800 A
Patr-DQA1*05:02 protein complex 19801 DQ
Patr-DRB1*02:14 protein complex 19802 DRB1
Patr-DPA1*01:09 protein complex 19803 DPA1
Patr-B*11:02 protein complex 19804 B
Patr-DRB5*01:02 protein complex 19805 DRB5
Patr-C*09:03 protein complex 19806 C
Patr-B*35:01 protein complex 19807 B
Patr-B*19:04 protein complex 19808 B
Patr-B*04:02 protein complex 19809 B
Patr-DPB1*01:12 protein complex 19810 DPB1
Patr-DPB1*02:02 protein complex 19811 DPB1
Patr-A*03:03 protein complex 19812 A
Patr-DPB1*01:10 protein complex 19813 DPB1
Patr-DRB3*02:01 protein complex 19814 DRB3
Patr-B*22:03 protein complex 19815 B
Patr-C*09:04 protein complex 19816 C
Patr-DQA1*20:03 protein complex 19817 DQ
Patr-B*30:02 protein complex 19818 B
Patr-C*02:04 protein complex 19819 C
Patr-DRB1*02:16 protein complex 19820 DRB1
Patr-DPB1*03:05 protein complex 19821 DPB1
Patr-DRB7*01:01 protein complex 19822 DRB7
Patr-DRB1*07:02 protein complex 19823 DRB1
Patr-C*03:06 protein complex 19824 C
Patr-C*07:02 protein complex 19825 C
Patr-DQB1*06:07 protein complex 19826 DQ
Patr-DRB5*03:14 protein complex 19827 DRB5
Patr-C*09:05 protein complex 19828 C
Patr-A*22:01 protein complex 19829 A
Patr-C*03:02 protein complex 19830 C
Patr-A*15:02 protein complex 19831 A
Patr-C*02:01 protein complex 19832 C
Patr-DRB1*02:04 protein complex 19833 DRB1
Patr-B*25:01 protein complex 19834 B
Patr-DQB1*03:03 protein complex 19835 DQ
Patr-DPA1*01:07 protein complex 19836 DPA1
Patr-DRA*01:03 protein complex 19837 DRA
Patr-DRB1*03:16 protein complex 19838 DRB1
Patr-DPB1*01:15 protein complex 19839 DPB1
Patr-B*39:01 protein complex 19840 B
Patr-DRB1*02:15 protein complex 19841 DRB1
Patr-A*08:01 protein complex 19842 A
Patr-DQB1*06:04 protein complex 19843 DQ
Patr-DPB1*01:04 protein complex 19844 DPB1
Patr-DRB5*01:03 protein complex 19845 DRB5
Patr-DRB3*07:03 protein complex 19846 DRB3
Patr-DRB5*03:07 protein complex 19847 DRB5
Patr-DRB5*03:13 protein complex 19848 DRB5
Patr-C*13:01 protein complex 19849 C
Patr-DRB3*01:03 protein complex 19850 DRB3
Patr-B*10:01 protein complex 19851 B
Patr-DQB1*06:01 protein complex 19852 DQ
Patr-DRB5*03:08 protein complex 19853 DRB5
Patr-DPA1*01:01 protein complex 19854 DPA1
Patr-DPB1*03:04 protein complex 19855 DPB1
Patr-C*07:01 protein complex 19856 C
Patr-A*08:03 protein complex 19857 A
Patr-B*07:04 protein complex 19858 B
Patr-B*21:02 protein complex 19859 B
Patr-B*11:03 protein complex 19860 B
Patr-DRB3*07:02 protein complex 19861 DRB3
Patr-C*02:06 protein complex 19862 C
Patr-DRB3*07:04 protein complex 19863 DRB3
Patr-C*16:01 protein complex 19864 C
Patr-DRB3*02:12 protein complex 19865 DRB3
Patr-B*22:07 protein complex 19866 B
Patr-A*10:01 protein complex 19867 A
Patr-B*27:01 protein complex 19868 B
Patr-DRB1*02:05 protein complex 19869 DRB1
Patr-C*17:01 protein complex 19870 C
Patr-A*03:06 protein complex 19871 A
Patr-A*17:02 protein complex 19872 A
Patr-B*35:02 protein complex 19873 B
Patr-A*13:01 protein complex 19874 A
Patr-DPB1*01:19 protein complex 19875 DPB1
Patr-DQA1*05:03 protein complex 19876 DQ
Patr-B*12:01 protein complex 19877 B
Patr-DRB3*02:14 protein complex 19878 DRB3
Patr-DPB1*01:18 protein complex 19879 DPB1
Patr-DQB1*03:04 protein complex 19880 DQ
Patr-C*02:02 protein complex 19881 C
Patr-C*03:04 protein complex 19882 C
Patr-B*12:02 protein complex 19883 B
Patr-B*40:01 protein complex 19884 B
Patr-B*29:01 protein complex 19885 B
Patr-B*19:02 protein complex 19886 B
Patr-B*06:01 protein complex 19887 B
Patr-A*25:01 protein complex 19888 A
Patr-DPA1*01:02 protein complex 19889 DPA1
Patr-DQB1*03:06 protein complex 19890 DQ
Patr-DRB3*01:02 protein complex 19891 DRB3
Patr-DRB1*03:07 protein complex 19892 DRB1
Patr-B*17:02 protein complex 19893 B
Patr-C*13:02 protein complex 19894 C
Patr-A*12:01 protein complex 19895 A
Patr-DRB3*02:07 protein complex 19896 DRB3
Patr-DRB3*02:13 protein complex 19897 DRB3
Patr-DPB1*01:14 protein complex 19898 DPB1
Patr-C*09:01 protein complex 19899 C
Patr-DRB1*02:03 protein complex 19900 DRB1
Patr-DRB4*01:06 protein complex 19901 DRB4
Patr-C*17:02 protein complex 19902 C
Patr-B*22:01 protein complex 19903 B
Patr-DRB1*03:12 protein complex 19904 DRB1
Patr-A*17:04 protein complex 19905 A
Patr-A*03:02 protein complex 19906 A
Patr-DRB1*03:05 protein complex 19907 DRB1
Patr-B*34:01 protein complex 19908 B
Patr-C*13:04 protein complex 19909 C
Patr-DRB5*03:12 protein complex 19910 DRB5
Patr-C*07:03 protein complex 19911 C
Patr-DQA1*20:01 protein complex 19912 DQ
Patr-C*04:02 protein complex 19913 C
Patr-DRB1*02:10 protein complex 19914 DRB1
Patr-DPA1*01:08 protein complex 19915 DPA1
Patr-C*10:02 protein complex 19916 C
Patr-B*40:02 protein complex 19917 B
Patr-DRB1*03:02 protein complex 19918 DRB1
Patr-DPB1*01:17 protein complex 19919 DPB1
Patr-DPB1*03:01 protein complex 19920 DPB1
Patr-A*03:07 protein complex 19921 A
Patr-AL*01:03 protein complex 19922 AL
Patr-DPA1*01:05 protein complex 19923 DPA1
Patr-DRB5*03:11 protein complex 19924 DRB5
Patr-C*02:05 protein complex 19925 C
Patr-B*26:01 protein complex 19926 B
Patr-DPA1*01:10 protein complex 19927 DPA1
Patr-DRB3*02:11 protein complex 19928 DRB3
Patr-DQB1*03:05 protein complex 19929 DQ
Patr-DRB5*03:05 protein complex 19930 DRB5
Patr-B*22:06 protein complex 19931 B
Patr-A*15:01 protein complex 19932 A
Patr-B*36:01 protein complex 19933 B
Patr-DQB1*15:01 protein complex 19934 DQ
Patr-B*30:01 protein complex 19935 B
Patr-DRB1*02:09 protein complex 19936 DRB1
Patr-DQB1*06:02 protein complex 19937 DQ
Patr-DRB4*01:07 protein complex 19938 DRB4
Patr-DQB1*15:03 protein complex 19939 DQ
Patr-DPB1*03:02 protein complex 19940 DPB1
Patr-DRB1*02:02 protein complex 19941 DRB1
Patr-B*05:02 protein complex 19942 B
Patr-DRA*01:04 protein complex 19943 DRA
Patr-C*10:01 protein complex 19944 C
Patr-C*12:01 protein complex 19945 C
Patr-C*05:01 protein complex 19946 C
Patr-DPB1*01:08 protein complex 19947 DPB1
Patr-DPB1*02:01 protein complex 19948 DPB1
Patr-A*02:01 protein complex 19949 A
Patr-B*07:01 protein complex 19950 B
Patr-C*09:02 protein complex 19951 C
Patr-DRB1*03:11 protein complex 19952 DRB1
Patr-DPB1*01:02 protein complex 19953 DPB1
Patr-DRB5*01:01 protein complex 19954 DRB5
Patr-B*23:04 protein complex 19955 B
Patr-B*18:01 protein complex 19956 B
Patr-DRB5*03:09 protein complex 19957 DRB5
Patr-B*23:03 protein complex 19958 B
Patr-A*03:05 protein complex 19959 A
Patr-DQA2*01:01 protein complex 19960 DQ
Patr-B*23:05 protein complex 19961 B
Patr-A*18:01 protein complex 19962 A
Patr-B*38:01 protein complex 19963 B
Patr-A*21:01 protein complex 19964 A
Patr-DPB1*01:16 protein complex 19965 DPB1
Patr-DPB1*01:09 protein complex 19966 DPB1
Patr-DRB1*02:13 protein complex 19967 DRB1
Patr-DPB1*01:07 protein complex 19968 DPB1
Patr-B*02:03 protein complex 19969 B
Patr-B*07:02 protein complex 19970 B
Patr-B*33:01 protein complex 19971 B
Patr-B*15:01 protein complex 19972 B
Patr-DRB1*03:04 protein complex 19973 DRB1
Patr-A*08:02 protein complex 19974 A
Patr-DQA1*01:01 protein complex 19975 DQ
Patr-B*20:02 protein complex 19976 B
Patr-DRB1*03:09 protein complex 19977 DRB1
Patr-C*01:01 protein complex 19978 C
Patr-A*04:04 protein complex 19979 A
Patr-B*22:04 protein complex 19980 B
Patr-B*12:03 protein complex 19981 B
Patr-DRB4*01:05 protein complex 19982 DRB4
Patr-DPB1*01:03 protein complex 19983 DPB1
Patr-DRB1*02:07 protein complex 19984 DRB1
Patr-DQA1*20:04 protein complex 19985 DQ
Patr-DRB1*02:08 protein complex 19986 DRB1
Patr-DQB1*03:02 protein complex 19987 DQ
Patr-AL*01:02 protein complex 19988 AL
Patr-B*17:03 protein complex 19989 B
Patr-B*22:02 protein complex 19990 B
Patr-DPB1*01:11 protein complex 19991 DPB1
Patr-B*21:01 protein complex 19992 B
Patr-DQB2*01:03 protein complex 19993 DQ
Patr-DPB1*01:13 protein complex 19994 DPB1
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