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Pull requests: Clinical-Genomics/cg

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Pull requests list

Mt snv delivery report
#5302 opened Sep 3, 2026 by islean Member • Draft
15 tasks
1
2
DEV - Event driven External data ingestion and analysis starting
#5300 opened Sep 2, 2026 by diitaz93 Contributor • Draft
15 tasks
1
Sample stored handler
#5299 opened Sep 2, 2026 by islean Member • Draft
15 tasks
11
fix: support configured nextflow directories
#5298 opened Sep 1, 2026 by ahdamin Contributor • Draft
@ahdamin
1
Refactor order submission to use external order submitter service
#5295 opened Aug 31, 2026 by diitaz93 Contributor Loading…
11 tasks
1
Create event when order with external samples is submitted
#5292 opened Aug 31, 2026 by diitaz93 Contributor • Draft
15 tasks
2
Possible new layout for the admin view
#5286 opened Aug 26, 2026 by RasmusBurge-CG Contributor Loading…
15 tasks
1
1
Use a fresh database for flask tests
#5285 opened Aug 25, 2026 by mogmi Contributor Loading…
1 of 3 tasks
2
Upload saltshaker report to Scout for raredisease
#5234 opened Aug 6, 2026 by diitaz93 Contributor Loading…
15 tasks
2
6
Remove outdated information
#5218 opened Jul 24, 2026 by Vince-janv Member Loading…
1
11
Update to Nallo 1.0.0
#5210 opened Jul 17, 2026 by fellen31 Contributor • Draft
15 tasks
1
fix: add session retries to DDN dataflow client
#5183 opened Jul 7, 2026 by ahdamin Contributor Loading…
1
2
Remove reordering of existing cases [ON HOLD]
#5166 opened Jun 29, 2026 by diitaz93 Contributor Loading…
15 tasks
1
4
Patch race condition in demultiplexing
#5106 opened May 26, 2026 by RasmusBurge-CG Contributor • Draft
15 tasks
1
Refactor most "cg store" commands to be called "cg prepare"
#5059 opened Apr 27, 2026 by mogmi Contributor • Draft
1
Keep a changelog
#5038 opened Apr 18, 2026 by dnil Member Loading…
15 tasks
1
1
Case created at non nullable
#5037 opened Apr 17, 2026 by mogmi Contributor Loading…
1 of 3 tasks
4
Two CG CI workflows exist. Pick the current pytest used with deploys to the default branch
#5036 opened Apr 17, 2026 by dnil Member Loading…
15 tasks
2
Increase the fallback for microSALT version command
#4974 opened Mar 24, 2026 by RasmusBurge-CG Contributor Loading…
15 tasks
5
Patch post processing error raising
#4849 opened Jan 22, 2026 by islean Member Loading…
15 tasks
4
Switch from abstract classes to protocols with generic types
#4797 opened Dec 22, 2025 by mogmi Contributor • Draft
15 tasks
2
Create analysis in Trailblazer first for raw-data
#4793 opened Dec 19, 2025 by mogmi Contributor • Draft
15 tasks
1
remove workflow_bin_path for taxprofiler
#4787 opened Dec 17, 2025 by RasmusBurge-CG Contributor Loading…
1 of 15 tasks
1
Remove workflow_bin_path
#4786 opened Dec 16, 2025 by RasmusBurge-CG Contributor Loading…
15 tasks
3
update variant catalog path in raredisease bundle
#4781 opened Dec 16, 2025 by ramprasadn Contributor Loading…
15 tasks
1
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