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Support non-consecutive n_clusters in ClusterAutoK - #127

Merged
marcovarrone merged 6 commits into
mainfrom
fix-autok-non-consecutive-117
Oct 18, 2026
Merged

marcovarrone merged 6 commits into
mainfrom
fix-autok-non-consecutive-117

Retry CODEX fixtures rejected by AnnData validation

f9d513a
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Codecov / codecov/project succeeded Oct 18, 2026 in 1s

70.61% (target 1.00%)

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70.61% (target 1.00%)

Details

Codecov Report

❌ Patch coverage is 94.11765% with 2 lines in your changes missing coverage. Please review.
✅ Project coverage is 70.61%. Comparing base (3969db1) to head (f9d513a).

Files with missing lines Patch % Lines
src/cellcharter/tl/_autok.py 93.93% 2 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #127      +/-   ##
==========================================
+ Coverage   68.48%   70.61%   +2.12%     
==========================================
  Files          23       23              
  Lines        1682     1698      +16     
==========================================
+ Hits         1152     1199      +47     
+ Misses        530      499      -31     
Files with missing lines Coverage Δ
src/cellcharter/pl/_autok.py 87.50% <100.00%> (ø)
src/cellcharter/tl/_autok.py 86.77% <93.93%> (+16.25%) ⬆️

... and 1 file with indirect coverage changes

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