BLV-OSAV-USAV · GuySchnidrig · May 15, 2026 · May 15, 2026 · May 15, 2026 · May 15, 2026
diff --git a/.gitignore b/.gitignore
@@ -88,9 +88,8 @@ nosetests.xml
 psmv-data.duckdb
 *.jar
 shacl-documentaion-log.txt
-rdf/data/
-rdf/processed/*
-!rdf/processed/graph.ttl
+rdf/data/**
+rdf/processed/**
 !rdf/processed/shapes.ttl
 
 # =============================================================================
@@ -100,6 +99,13 @@ rdf/processed/*
 tests/*
 !tests/test_connection.py
 
+# =============================================================================
+# Specific RDF files
+# =============================================================================
+
+# SHACL valication report
+rdf/processed/shacl-report.ttl
+
 # =============================================================================
 # Notes
 # =============================================================================

diff --git a/README.md b/README.md
@@ -35,7 +35,16 @@ A Python module for converting Swiss plant protection product data from CSV form
     python -m service.pipeline
     ```
 
-4. Upload graph
+4. To upload the graph, first, place a `.env` file in the directory root:
+
+    ``` bash
+    LINDAS_USER=lindas-foag-plant-protection
+    LINDAS_PASSWORD=************
+    ENDPOINT=https://graphdb.lindas.admin.ch/repositories/lindas/rdf-graphs/service
+    GRAPH=https://lindas.admin.ch/fsvo/plant-protection-products
+    ```
+
+    Then trigger the upload to LINDAS:
 
     ``` bash
     python -m service.upload_graph
@@ -46,14 +55,14 @@ A Python module for converting Swiss plant protection product data from CSV form
 ``` bash
 psmv-rdf/
 ├── .github/
-├── data/           # any non-RDF data files
+├── README.md
+├── data/           # any non-RDF data files, used as input data
 │   ├── raw/        # input CSV files
-│   ├── mapping/    # yaml mapping files
-│   └── processed/  # intermediately generated CSV files
+│   └── mapping/    # yaml mapping files
 ├── services/
 │   └── pipeline.py       
 ├── src/
-│    ├── sparql     # SPARQL inference rules
+│    ├── sparql     # SPARQL queries and inference rules
 │    └── python/    # Python scripts for specific tasks
 ├── rdf/
 │   ├── ontology/   # OWL ontology documentation
@@ -64,21 +73,16 @@ psmv-rdf/
 ├── tests/
 ├── docs/           # project documentation
 ├── .gitignore
-├── README.md
 └── environment.yml
 ```
 
-## Ontology documentation
+## Documentation
 
 All ontology documentation files are written to `rdf/ontology`.
-You may inspect a visual representation of the ontology used here: <https://service.tib.eu/webvowl/#iri=https://raw.githubusercontent.com/BLV-OSAV-USAV/PSMV-RDF/refs/heads/main/rdf/ontology/core.ttl>
-
-## Data model
+[You may inspect a visual representation of the ontology used here.](https://service.tib.eu/webvowl/#iri=https://raw.githubusercontent.com/BLV-OSAV-USAV/PSMV-RDF/refs/heads/main/rdf/ontology/core.ttl)
 
 A more restricted data model is written in SHACL and [can be inspected here](https://blv-osav-usav.github.io/PSMV-RDF/shacl-documentation.html).
 
-## Dependencies
-
 Project dependencies are listed in [pyproject.toml](pyproject.toml).
 
 ## Acknowledgments 

diff --git a/data/mapping/mapping_columns.yaml b/data/mapping/mapping_columns.yaml
@@ -113,4 +113,25 @@ ApplicationArea:
 ApplicationComment:
   NK_ApplicationComment: application_comment
   NK_Codetable: application_comment_id
-  NK_Indication: indication
+  NK_Indication: indication
+
+ProductCodeR:
+  NK_Codetable: code_id
+  NK_PROD_REF: product_id
+
+ProductCodeS:
+  NK_codetable: code_id
+  NK_PROD_REF: product_id
+
+ProductDangerSymbol:
+  NK_Codetable: code_id
+  NK_PROD_REF: product_id
+
+ProductSignalWords:
+  NK_Codetable: code_id
+  NK_SignalWord: signal_word_id
+  NK_PROD_REF: product_id
+
+ProductProductCategory:
+  NK_Codetable: code_id
+  NK_Product: product_id
diff --git a/data/mapping/mapping_datasets.yaml b/data/mapping/mapping_datasets.yaml
@@ -64,4 +64,28 @@ datasets:
     delimiter: ","
     encoding: "utf-8"
     description: "PSMV Export ProductIngredient Jan 2026"
-
+  ProductCodeR:
+    input: "data/raw/ProductCodeR.csv"
+    delimiter: ","
+    encoding: "utf-8"
+    description: "PSMV Export Hazard Statements (R-Codes)"
+  ProductCodeS:
+    input: "data/raw/ProductCodeS.csv"
+    delimiter: ","
+    encoding: "utf-8"
+    description: "PSMV Export Precautionary Statements (S-Codes)"
+  ProductDangerSymbol:
+    input: "data/raw/ProductDangerSymbol.csv"
+    delimiter: ","
+    encoding: "utf-8"
+    description: "PSMV Export Hazard Pictograms"
+  ProductSignalWords:
+    input: "data/raw/ProductSignalWords.csv"
+    delimiter: ","
+    encoding: "utf-8"
+    description: "PSMV Export Signal Words"
+  ProductProductCategory:
+    input: "data/raw/ProductProductCategory.csv"
+    delimiter: ","
+    encoding: "utf-8"
+    description: "PSMV Export Product Categories"
diff --git a/data/mapping/mapping_rdf.yaml b/data/mapping/mapping_rdf.yaml
@@ -38,4 +38,33 @@ type_mapping:
 
 unit_mapping:
   gram_per_litre: http://qudt.org/vocab/unit/GM-PER-L
-  percent: http://qudt.org/vocab/unit/PERCENT
+  percent: http://qudt.org/vocab/unit/PERCENT
+
+category_mapping:
+  "81E2110B-C061-4BA7-A863-25C06F2F5466": "PGR"
+  "6A901B41-29FE-4651-9DD0-239A3FA87233": "STP"
+  "43AA825A-6DFE-4E32-9AF2-D3A53D740E3A": "BIA"
+  "C9FE4A13-A36D-4464-BF1F-65DCB3462CE0": "PHE"
+  "C975EC0B-DD20-445A-B414-2B84BBC3C75E": "BNA"
+  "29B69EF4-AA1D-47E2-95F4-5B64F99A46C4": "CPP"
+  "7C5F5EF9-3DAE-4522-9895-B8F000F202D3": "SPP"
+  "5F9CE86B-112F-4B58-99E1-01545BB3D659": "INS"
+  "3CAD9105-7B40-43F0-8667-CF170D481F6B": "Product"
+  "97881D31-B47A-4148-814D-FF426F9B0E73": "BMA"
+  "8425418F-24DF-4E5B-AE89-C310FD7B1591": "ROD"
+  "E0A41A6B-AE4E-46BD-B51A-631BE77F00A9": "PDI"
+  "DEAB7EE2-995A-47D5-B8C0-5BA5413C7418": "NEM"
+  "393B3D65-22C0-4AD1-8AC1-7E9F7C81E529": "MOL"
+  "39F5B5A5-90D7-4D6B-A651-0A076C70A86C": "WAA"
+  "0D385AAD-C89F-4B13-8D9F-90E89397AA3A": "ABA"
+  "1416E266-2447-4520-8A91-CF77F38F924A": "IVA"
+  "47583D3A-E05F-4212-BE3B-C4E3788ECEE1": "CPP"
+  "5C94FFB7-603E-44FF-8AA9-AC0F1F7A857D": "VIR"
+  "0BD36B1F-4A27-4A8B-A2FF-6CC265521C15": "DIS"
+  "8A9EBFE1-E262-4EE9-A49F-763381986F6A": "BBA"
+  "F60B64E7-8599-4D47-A381-1C71751C3F60": "SPP"
+  "ADD523C1-A5BC-4C09-A98E-7106F0AC04F1": "BAC"
+  "70C26F0A-B219-4EAF-BC58-229AEFE6AC81": "HER"
+  "51DCB40B-FA9C-4DE5-84F1-96635758AB05": "ACA"
+  "056DADD1-35C6-49CA-B583-41CE5849C105": "FUN"
+  "CAC7C436-99CE-4214-81E4-48C227B810E8": "FBA"
diff --git a/rdf/example/example.ttl b/rdf/example/example.ttl
@@ -21,7 +21,7 @@ product:W-6761 a :Fungicide ;
     :federalAdmissionNumber "W-6761" ;
     :ingredient [
         :substance substance:1 ;
-        schema:value [
+        :share [
             schema:value 14.85 ;
             schema:unitCode unit:PERCENT
         ], [
@@ -31,7 +31,7 @@ product:W-6761 a :Fungicide ;
     ] ,
     [
         :substance substance:2 ;
-        schema:value [
+        :share [
             schema:value 7.43 ;
             schema:unitCode unit:PERCENT
         ], [

diff --git a/rdf/ontology/core.ttl b/rdf/ontology/core.ttl
@@ -220,144 +220,6 @@ schema:PostalAddress a owl:Class ;
     rdfs:domain :Product ;
     rdfs:range xsd:date .
 
-# Product taxonomy -------------------------------------------------------------
-
-:BiologicalControlAgent a owl:Class ;
-    rdfs:subClassOf :Product ;
-    schema:name "Biological control agent"@en ;
-    schema:description "A living organism or a product derived from it used to combat plant pests or pathogens. These include beneficial insects, mites, nematodes, fungi, bacteria, or viruses."@en .
-
-:ChemicalProtectionProduct a owl:Class ;
-    rdfs:subClassOf :Product ;
-    schema:name "Chemical Protection Product"@en ;
-    schema:description "Any crop protection product that can be reasonably well described by its chemical ingredients/synthesis rather than biological origin."@en .
-
-# Biological Control Agents-----------------------------------------------------
-
-:AntifungalBiologicalAgent a owl:Class ;
-    rdfs:subClassOf :BiologicalControlAgent ;
-    schema:name "Antifungal biological agent"@en ;
-    schema:description "Biological control agents used to protect plants from harmful fungi, based on natural organisms or their byproducts."@en .
-
-:BacterialBiologicalAgent a owl:Class ;
-    rdfs:subClassOf :BiologicalControlAgent ;
-    schema:name "Bacterial biological agent"@en ;
-    schema:description "Biological control agents composed of or derived from bacteria, combating pests or diseases through mechanisms such as competition or antimicrobial production."@en .
-
-:FungalBiologicalAgent a owl:Class ;
-    rdfs:subClassOf :BiologicalControlAgent ;
-    schema:name "Fungal Biological Agent"@en ;
-    schema:description "Biological control agents composed of or derived from fungi, combating pests, diseases, or weeds through mechanisms such as antagonism or parasitism."@en .
-
-:InsectVirusAgent a owl:Class ;
-    rdfs:subClassOf :BiologicalControlAgent ;
-    schema:name "Insect Virus Agent"@en ;
-    schema:description "Biological control agents containing viruses that specifically target and harm insect pests."@en .
-
-:BeneficialInsectAgent a owl:Class ;
-    rdfs:subClassOf :BiologicalControlAgent ;
-    schema:name "Beneficial Insect Agent"@en ;
-    schema:description "Biological control agents consisting of live or derived insect species used to combat other pests."@en .
-
-:BeneficialMiteAgent a owl:Class ;
-    rdfs:subClassOf :BiologicalControlAgent ;
-    schema:name "Beneficial Mite Agent"@en ;
-    schema:description "Biological control agents containing beneficial mite species used to control harmful insects or other mites."@en .
-
-:BeneficialNematodeAgent a owl:Class ;
-    rdfs:subClassOf :BiologicalControlAgent ;
-    schema:name "Beneficial Nematode Agent"@en ;
-    schema:description "Biological control agents containing live nematodes that specifically target harmful insects in soil or plants."@en .
-
-# Chemical Products ------------------------------------------------------------
-
-:Acaricide a owl:Class ;
-    rdfs:subClassOf :ChemicalProtectionProduct ;
-    schema:name "Acaricide"@en ;
-    schema:description "A chemical crop protection product used to control mites and ticks."@en .
-
-:WettingAndAdhesionAgent a owl:Class ;
-    rdfs:subClassOf :ChemicalProtectionProduct ;
-    schema:name "Wetting and Adhesion Agent"@en ;
-    schema:description "Chemical products used to distribute crop protection products evenly on plant surfaces and enhance their adhesion/efficacy."@en .
-
-:Bactericide a owl:Class ;
-    rdfs:subClassOf :ChemicalProtectionProduct ;
-    schema:name "Bactericide"@en ;
-    schema:description "A chemical product used to combat bacterial pathogens that harm agricultural crops, such as fire blight."@en .
-
-:Disinfectant a owl:Class ;
-    rdfs:subClassOf :ChemicalProtectionProduct ;
-    schema:name "Disinfectant"@en ;
-    schema:description "Chemical agents used to destroy or inhibit the growth of harmful organisms on equipment or storage surfaces."@en .
-
-:Fungicide a owl:Class ;
-    rdfs:subClassOf :ChemicalProtectionProduct ;
-    schema:name "Fungicide"@en ;
-    schema:description "A chemical product used to combat fungal diseases by killing fungi or inhibiting their spores/growth."@en .
-
-:Herbicide a owl:Class ;
-    rdfs:subClassOf :ChemicalProtectionProduct ;
-    schema:name "Herbicide"@en ;
-    schema:description "A chemical product used to control or eliminate unwanted plants (weeds)."@en .
-
-:Insecticide a owl:Class ;
-    rdfs:subClassOf :ChemicalProtectionProduct ;
-    schema:name "Insecticide"@en ;
-    schema:description "A chemical product specifically designed to control insect populations."@en .
-
-:Molluscicide a owl:Class ;
-    rdfs:subClassOf :ChemicalProtectionProduct ;
-    schema:name "Molluscicide"@en ;
-    schema:description "A chemical product used to control mollusks, particularly slugs and snails."@en .
-
-:PlantDefenseInducer a owl:Class ;
-    rdfs:subClassOf :ChemicalProtectionProduct ;
-    schema:name "Plant Defense Inducer"@en ;
-    schema:description "A chemical product that activates the natural defense mechanisms (immune system) of plants without directly targeting the pathogen."@en .
-
-:Nematicide a owl:Class ;
-    rdfs:subClassOf :ChemicalProtectionProduct ;
-    schema:name "Nematicide"@en ;
-    schema:description "A chemical product used to control nematodes (roundworms) that damage root systems."@en .
-
-:PlantGrowthRegulator a owl:Class ;
-    rdfs:subClassOf :ChemicalProtectionProduct ;
-    schema:name "Plant Growth Regulator"@en ;
-    schema:description "Chemical substances that influence the growth and development of plants (e.g. hormone mimics)."@en .
-
-:Rodenticide a owl:Class ;
-    rdfs:subClassOf :ChemicalProtectionProduct ;
-    schema:name "Rodenticide"@en ;
-    schema:description "Chemical agents used to control rodent infestations in agricultural settings."@en .
-
-:SeedTreatmentProduct a owl:Class ;
-    rdfs:subClassOf :ChemicalProtectionProduct ;
-    schema:name "Seed Treatment Product"@en ;
-    schema:description "Chemicals applied to seeds prior to planting to protect them from pathogens and pests."@en .
-
-:StorageProtectionProduct a owl:Class ;
-    rdfs:subClassOf :ChemicalProtectionProduct ;
-    schema:name "Storage Protection Product"@en ;
-    schema:description "Products applied to protect harvested crops during storage."@en .
-
-:Virucide a owl:Class ;
-    rdfs:subClassOf :ChemicalProtectionProduct ;
-    schema:name "Virucide"@en ;
-    schema:description "Agents capable of neutralizing or destroying viruses affecting crops."@en .
-
-# Insecticide subclsses --------------------------------------------------------
-
-:Pheromone a owl:Class ;
-    rdfs:subClassOf :Insecticide ;
-    schema:name "Pheromone"@en ;
-    schema:description "Chemical substances secreted by insects (or synthetic analogues) used as attractants to monitor or control pest populations."@en .
-
-:SoapBasedInsecticide a owl:Class ;
-    rdfs:subClassOf :Insecticide ;
-    schema:name "Soap-based Insecticide"@en ;
-    schema:description "Insecticides derived from fatty acid salts (soaps) used for soft-body insect control."@en .
-
 # ==============================================================================
 # INDICATION CLASS DEFINITION AND PROPERTIES
 # ==============================================================================
@@ -478,4 +340,12 @@ schema:QuantitativeValue a owl:Class ;
         a owl:Restriction ;
         owl:onProperty schema:name ;
         owl:allValuesFrom xsd:string
-    ] .
+    ] .
+
+# ==============================================================================
+# PROPERTIES
+# ==============================================================================
+
+schema:legalName rdfs:subPropertyOf schema:name .
+
+:productType rdfs:subPropertyOf rdf:type .