Bump tifffile from 2025.3.30 to 2025.12.20

[dependabot]

Bumps tifffile from 2025.3.30 to 2025.12.20.

Release notes

Sourced from tifffile's releases.

v2025.12.20

Read and write TIFF files

Tifffile is a Python library to

1. store NumPy arrays in TIFF (Tagged Image File Format) files, and
2. read image and metadata from TIFF-like files used in bioimaging.

Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, GeoTIFF, Adobe DNG, ZIF (Zoomable Image File Format), MetaMorph STK, Zeiss LSM, ImageJ hyperstack, Micro-Manager MMStack and NDTiff, SGI, NIHImage, Olympus FluoView and SIS, ScanImage, Molecular Dynamics GEL, Aperio SVS, Leica SCN, Roche BIF, PerkinElmer QPTIFF (QPI, PKI), Hamamatsu NDPI, Argos AVS, Philips DP, and ThermoFisher EER formatted files.

Image data can be read as NumPy arrays or Zarr arrays/groups from strips, tiles, pages (IFDs), SubIFDs, higher order series, and pyramidal levels.

Image data can be written to TIFF, BigTIFF, OME-TIFF, and ImageJ hyperstack compatible files in multi-page, volumetric, pyramidal, memory-mappable, tiled, predicted, or compressed form.

Many compression and predictor schemes are supported via the imagecodecs library, including LZW, PackBits, Deflate, PIXTIFF, LZMA, LERC, Zstd, JPEG (8 and 12-bit, lossless), JPEG 2000, JPEG XR, JPEG XL, WebP, PNG, EER, Jetraw, 24-bit floating-point, and horizontal differencing.

Tifffile can also be used to inspect TIFF structures, read image data from multi-dimensional file sequences, write fsspec ReferenceFileSystem for TIFF files and image file sequences, patch TIFF tag values, and parse many proprietary metadata formats.

Changes

• Do not initialize output arrays.

v2025.12.12

Read and write TIFF files

Tifffile is a Python library to

1. store NumPy arrays in TIFF (Tagged Image File Format) files, and
2. read image and metadata from TIFF-like files used in bioimaging.

Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, GeoTIFF, Adobe DNG, ZIF (Zoomable Image File Format), MetaMorph STK, Zeiss LSM, ImageJ hyperstack, Micro-Manager MMStack and NDTiff, SGI, NIHImage, Olympus FluoView and SIS, ScanImage, Molecular Dynamics GEL, Aperio SVS, Leica SCN, Roche BIF, PerkinElmer QPTIFF (QPI, PKI), Hamamatsu NDPI, Argos AVS, Philips DP, and ThermoFisher EER formatted files.

Image data can be read as NumPy arrays or Zarr arrays/groups from strips, tiles, pages (IFDs), SubIFDs, higher order series, and pyramidal levels.

Image data can be written to TIFF, BigTIFF, OME-TIFF, and ImageJ hyperstack compatible files in multi-page, volumetric, pyramidal, memory-mappable, tiled, predicted, or compressed form.

Many compression and predictor schemes are supported via the imagecodecs library, including LZW, PackBits, Deflate, PIXTIFF, LZMA, LERC, Zstd, JPEG (8 and 12-bit, lossless), JPEG 2000, JPEG XR, JPEG XL, WebP, PNG, EER, Jetraw, 24-bit floating-point, and horizontal differencing.

Tifffile can also be used to inspect TIFF structures, read image data from multi-dimensional file sequences, write fsspec ReferenceFileSystem for TIFF files and image file sequences, patch TIFF tag values, and parse many proprietary metadata formats.

Changes

• Improve code quality.

v2025.10.16

Read and write TIFF files

Tifffile is a Python library to

1. store NumPy arrays in TIFF (Tagged Image File Format) files, and

... (truncated)

Changelog

Sourced from tifffile's changelog.

2025.12.20

• Do not initialize output arrays.

2025.12.12

• Improve code quality.

2025.10.16

• Add option to decode EER super-resolution sub-pixels (breaking, #313).
• Parse EER metadata to dict (breaking).

2025.10.4

• Fix parsing SVS description ending with "|".

2025.9.30

• Fix reading NDTiff series with unordered axes in index (#311).

2025.9.20

• Derive TiffFileError from ValueError.
• Natural-sort files in glob pattern passed to imread by default (breaking).
• Fix optional sorting of list of files passed to FileSequence and imread.

2025.9.9

• Consolidate Nuvu camera metadata.

2025.8.28

• Support DNG DCP files (#306).

2025.6.11

• Fix reading images with dimension length 1 through Zarr (#303).

2025.6.1

• Add experimental option to write iterator of bytes and bytecounts (#301).

2025.5.26

• Use threads in Zarr stores.

2025.5.24

• Fix incorrect tags created by Philips DP v1.1 (#299).

... (truncated)

Commits

• 976465b Release v2025.12.20
• 02868c8 Update CHANGES.rst
• 2bdd074 Update tifffile/_imagecodecs.py
• 04e2911 Update tifffile/tifffile.py
• 4f4bb66 Update tests/test_tifffile.py
• 127cc3a Update setup.py
• 6717318 Release v2025.12.12
• a408286 Update CHANGES.rst
• ad71c3c Update examples/earthbigdata.py
• 84ac987 Update examples/issue125.py
• Additional commits viewable in compare view

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[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 99.23%. Comparing base (e7ef99b) to head (aa9e188).

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #491   +/-   ##
=======================================
  Coverage   99.23%   99.23%           
=======================================
  Files          13       13           
  Lines         781      781           
  Branches       82       82           
=======================================
  Hits          775      775           
  Misses          5        5           
  Partials        1        1           

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