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  • BCCRC

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Achievements

Achievement: Pull Sharkx2Achievement: YOLOAchievement: Arctic Code Vault Contributor

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  1. uclahs-cds/metapipeline-DNA uclahs-cds/metapipeline-DNA Public

    Nextflow pipeline to convert BAM to FASTQ, align, perform QC, assess targeted coverage, call gSNP, call sSNV, call mtSNV, call SVs, call sCNA, and perform subclonal reconstruction

    Groovy 20 1

  2. uclahs-cds/public-R-CancerEvolutionVisualization uclahs-cds/public-R-CancerEvolutionVisualization Public

    Publication Quality Phylogenetic Tree Plots

    R 2

  3. LCR-BCCRC/lcr-modules LCR-BCCRC/lcr-modules Public

    Collection of standard analytical pipelines for genomic and transcriptomic data

    Python 17 8

  4. oncardia-model oncardia-model Public

    OnCardia predicts Cancer Therapy-Related Cardiac Dysfunction (CTRCD) in HER2+ breast-cancer patients. It pairs a guideline baseline (HFA-ICOS proforma) with gradient-boosted machine-learning tiers …

    Jupyter Notebook

  5. uclahs-cds/tool-NFTest uclahs-cds/tool-NFTest Public

    CLI to automate Nextflow pipeline testing

    Python 12 2

  6. uclahs-cds/package-bedr uclahs-cds/package-bedr Public

    Genomic Region Processing using Tools Such as `BEDTools`, `BEDOPS` and `Tabix`

    R 1 3