Added Limma splice variant analysis files#1
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Here are the two files I used to run splice variant analysis using Limma. The fixed effects include sex, lane and condition (congenic/control), while the random effect is subject ID. This random effect is included using the duplicateCorrelation function to estimate within replicate correlation. The output of this function is then included in the lmFit function.
This runs very quickly compared to DEXSeq, a matter of minutes on one core, than hours on multiple cores.