Add option to report protein count when filtering by taxa in private_api#98
Closed
pverscha wants to merge 1 commit into
Closed
Add option to report protein count when filtering by taxa in private_api#98pverscha wants to merge 1 commit into
pverscha wants to merge 1 commit into
Conversation
Member
Author
|
Merged with #101. |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This PR expands the
private_api/taxaendpoint and adds a new parameterreport_protein_countthat will report the amount of proteins that are associated with the provided taxa. If a taxon is provided at a level that's higher than species or strain, the protein count is equal to the sum of the protein count of all descendant taxa.Example:
Request:
{ "taxids": [4751], "report_protein_count": true }Response:
[ { "id": 4751, "name": "Fungi", "rank": "kingdom", "lineage": [ 2759, null, 4751, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ], "protein_count": 38050 } ]