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1. tnm tnm Public

   Torsional Network Model for computing structure-based normal modes of proteins in torsion angle space

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2. Prot_evol Prot_evol Public

   Code for computing structure and stability constrained protein evolution (SSCPE) substitution models that can be used by SSCPE.pl for inferring ML trees with raxml-ng. It also simulates stability c…

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3. SSCPE SSCPE Public

   Software and data associated with the Structure and stability constrained protein evolution model (SSCPE) for phylogenetic inference and the program Prot_evol

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4. PC_ali PC_ali Public

   Multiple sequence and structure aligner PC_ali

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5. Molecular_clock Molecular_clock Public

   Software related with the paper "The molecular clock in the evolution of protein structures"

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6. ProtEvol ProtEvol Public

   Please go to the updated version https://github.com/ugobas/Prot_evol The Prot_evol program computes site-specific amino acid substitution models that implement selection on the thermodynamic stabil…

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