fix(copy-me): updating docs and little fixes within copy-me to enable …

.secrets.baseline

@@ -131,29 +131,6 @@
     }
   ],
   "results": {
-    "copy-me/values/values.yaml": [
-      {
-        "type": "Secret Keyword",
-        "filename": "copy-me/values/values.yaml",
-        "hashed_secret": "e770ebb1d9519a3a5251ee49080de5593b7e3033",
-        "is_verified": false,
-        "line_number": 25
-      },
-      {
-        "type": "Secret Keyword",
-        "filename": "copy-me/values/values.yaml",
-        "hashed_secret": "4dfc60d0a1d736af929723aa242661ec0f456eb1",
-        "is_verified": false,
-        "line_number": 329
-      },
-      {
-        "type": "Secret Keyword",
-        "filename": "copy-me/values/values.yaml",
-        "hashed_secret": "804feb6b33a6b995a2e56955a78c8241f3bc48eb",
-        "is_verified": false,
-        "line_number": 330
-      }
-    ],
     "devplanetv2/dev-environments/avantol-helm/values/values.yaml": [
       {
         "type": "Secret Keyword",
@@ -833,5 +810,5 @@
       }
     ]
   },
-  "generated_at": "2026-06-22T17:57:03Z"
+  "generated_at": "2026-06-23T19:48:07Z"
 }

README.md

@@ -1,52 +1,11 @@
 # Helm Migration Guide
 
 ## Prerequisites
-
-### Access Your Admin VM
-1. Log in to your adminvm
-2. If the adminvm is not running, reach out to the security team to file an exception request
-
-## Important Disclaimer
-
-⚠️ **WARNING - CLOUD-AUTOMATION TO HELM MIGRATION SCRIPT** ⚠️
-
-This script performs a **BEST EFFORT** migration of your current cloud-automation deployment to Helm. Please be aware of the following:
-
-- This migration may not cover all edge cases or custom configurations
-- After migration, you **MUST** thoroughly test ALL Gen3 functionality
-- This script comes **WITHOUT ANY GUARANTEES** or warranties
-- Always backup your current deployment before proceeding
-- Review the generated Helm values carefully before deployment
-
-**We need your help!** Please verify all edge-cases for all your services. If things are not working as expected, please raise PRs so we can collectively make this migration script as comprehensive as possible.
-
-## Migration Process
-
-### Running the Migration Script
-
-The migration script will automatically create:
-- A `values.yaml` file that can be checked into git
-- Secrets in AWS Secrets Manager
-
-To execute the migration in your environment:
-
-```bash
-cd cloud-automation
-git checkout master
-git pull
-pip3 install boto3
-python3 helm-migration-script/migrate-to-helm.py
-```
-
-This will generate a `values.yaml` file in the current folder. The actual filename will contain your hostname found in `Gen3Secrets/00configmap.yaml`, e.g. `aoliu.planx-pla.net`, so the filename is `aoliu.planx-pla.net-values.yaml`. Use `scp` to copy this file to your local machine for the next steps ("Deployment Process" below).
-
-Example:
-
-```bash
-scp pauline@10.128.7.28:cloud-automation/pauline.planx-pla.net-values.yaml ~/Downloads/values.yaml
-```
-
-## Deployment Process
+Ensure the namespace you are attempting to create does not already exist in the devplanetv2 cluster.
+If it does go ensure the developer is no longer using the [environment](https://github.com/uc-cdis/gitops-dev).
+Hint, the namespace is likely NAMESPACE.planx-pla.net. If unused, delete the previous namespace before proceeding,
+note older ingresses may not play nice and will need their finalizers removed.
+(i.e. kubectl edit ingress -n NAMESPACE\_WITH\_CONFLICT) and set finalizers to `[]`, try deleting first though) 
 
 ### Setting Up Your Environment
 
@@ -68,21 +27,16 @@ scp pauline@10.128.7.28:cloud-automation/pauline.planx-pla.net-values.yaml ~/Dow
    - `helmBranch:` - Set to your desired [Helm](http://github.com/uc-cdis/gen3-helm) branch
    - `gitopsBranch:` - Set to your desired [GitOps](http://github.com/uc-cdis/gen3-gitops-dev) branch
 
+search for `main` and `change me`
 
 ![alt text](images/root-values.png)
 
-3. **Copy your migration values.yaml file** from the migration step to:
-   ```
-   gen3-gitops-dev/dev-environments/<your-env>/values/values.yaml
-   ```
-
-
-   ![alt text](images/generated-values.png)
-
 4. **Create a pull request** with your changes
 
 5. **Wait for merge** - Once your PR is merged, the application will be automatically created using ArgoCD
 
+6. **Autosync** - If autosync is not enabled you'll need to push the button in argocd's UI or run `argocd app sync gen3-dev-NAMESPACE`.
+
 ## Next Steps
 
 After deployment, ensure you:

copy-me/templates/app.yaml

@@ -1,7 +1,7 @@
 apiVersion: argoproj.io/v1alpha1
 kind: Application
 metadata:
-  name: gen3-dev-{{ .Values.name }}
+  name: "gen3-dev-{{ .Values.name }}"
   namespace: argocd
   finalizers:
   - resources-finalizer.argocd.argoproj.io
@@ -10,19 +10,19 @@ spec:
   sources:
     - path: helm/gen3
       repoURL: https://github.com/uc-cdis/gen3-helm
-      targetRevision: {{ .Values.helmBranch }}
+      targetRevision: "{{ .Values.helmBranch }}"
       helm:
-        releaseName: {{ .Values.Name }}
+        releaseName: "{{ .Values.Name }}"
         valueFiles:
-          - $values/devplanetv2/dev-environments/{{ .Values.name }}/values/values.yaml
+          - "$values/devplanetv2/dev-environments/{{ .Values.name }}/values/values.yaml"
     - repoURL: 'https://github.com/uc-cdis/gen3-gitops-dev.git'
-      targetRevision: {{ .Values.gitopsBranch }}
+      targetRevision: "{{ .Values.gitopsBranch }}"
       ref: values
   destination:
     server: "https://kubernetes.default.svc"
-    namespace: {{ .Values.name }}
+    namespace: "{{ .Values.name }}"
   ignoreDifferences:
-    - 
+    -
       kind: "Secret"
       jsonPointers:
       - /data

copy-me/values/values.yaml

@@ -1,5 +1,5 @@
 global:
-  # Disabling local Elasticasearch and Postgres. 
+  # Disabling local Elasticasearch and Postgres.
   dev: false
   aws:
     enabled: true
@@ -16,6 +16,7 @@ global:
   externalSecrets:
     deploy: true
     dbCreate: true
+    pushSecret: true
   hostname: <change me>.dev.planx-pla.net
   dictionaryUrl: https://s3.amazonaws.com/dictionary-artifacts/datadictionary/develop/schema.json
   # We disable portal by default to save $$$