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Migrate from poetry to uv #234

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Migrate from poetry to uv #234

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23 changes: 11 additions & 12 deletions .github/workflows/integration_tests.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -270,11 +270,10 @@ jobs:
if [[ "$REPO" == "gen3sdk-python" ]]; then
sed -i "s|^gen3 = \".*\"|gen3 = { git = \"https://github.com/uc-cdis/gen3sdk-python\", rev = \"$BRANCH\" }|" pyproject.toml
fi
pip install poetry
poetry lock
poetry install
poetry show
sudo apt update && poetry run playwright install-deps && poetry run playwright install --with-deps chromium
pip install uv
uv sync
uv pip list
sudo apt update && uv run playwright install-deps && uv run playwright install --with-deps chromium
sudo apt install openjdk-11-jre -y

# Configure credentials to access cluster.
Expand Down Expand Up @@ -430,7 +429,7 @@ jobs:
mkdir $HOME/.gen3
mkdir logs
echo "****** Prepare CI Environment ******" > logs/gh_action_logs.txt
if ! poetry run python -m gen3_ci.scripts.prepare_ci_environment >> logs/gh_action_logs.txt 2>&1; then
if ! uv run python -m gen3_ci.scripts.prepare_ci_environment >> logs/gh_action_logs.txt 2>&1; then
echo "PR_ERROR_MSG=Failed to Prepare CI environment" >> $GITHUB_ENV
exit 1
fi
Expand Down Expand Up @@ -466,7 +465,7 @@ jobs:
run: |
echo -e "\n\n************ Run tests ************" >> logs/gh_action_logs.txt
mkdir output
poetry run pytest --video=retain-on-failure -n logical -m "${{ inputs.SERVICE_TO_TEST }} and not wip" --alluredir allure-results --no-header --dist loadscope ${{ env.TEST_LABEL }} >> logs/gh_action_logs.txt 2>&1
uv run pytest --video=retain-on-failure -n logical -m "${{ inputs.SERVICE_TO_TEST }} and not wip" --alluredir allure-results --no-header --dist loadscope ${{ env.TEST_LABEL }} >> logs/gh_action_logs.txt 2>&1
if [ $? -ne 0 ]; then
echo "PR_ERROR_MSG=Test(s) failures encountered in PR" >> $GITHUB_ENV
fi
Expand All @@ -478,7 +477,7 @@ jobs:
run: |
echo -e "\n\n************ Run tests ************" >> logs/gh_action_logs.txt
mkdir output
poetry run pytest --video=retain-on-failure -n logical -m "not wip" --alluredir allure-results --no-header --dist loadscope ${{ env.TEST_LABEL }} >> logs/gh_action_logs.txt 2>&1
uv run pytest --video=retain-on-failure -n logical -m "not wip" --alluredir allure-results --no-header --dist loadscope ${{ env.TEST_LABEL }} >> logs/gh_action_logs.txt 2>&1
if [ $? -ne 0 ]; then
echo "PR_ERROR_MSG=Test(s) failures encountered in PR" >> $GITHUB_ENV
fi
Expand All @@ -492,7 +491,7 @@ jobs:
run: |
echo -e "\n\n************ Rerunning failed tests ************" >> logs/gh_action_logs.txt 2>&1
mv output/report.md output/report_run_before_rerun.md
poetry run pytest --video=retain-on-failure -n logical -m "not wip" --alluredir rerun-allure-results --no-header --dist loadscope --last-failed --last-failed-no-failures=none >> logs/gh_action_logs.txt 2>&1
uv run pytest --video=retain-on-failure -n logical -m "not wip" --alluredir rerun-allure-results --no-header --dist loadscope --last-failed --last-failed-no-failures=none >> logs/gh_action_logs.txt 2>&1
if [ $? -ne 0 ]; then
echo "PR_ERROR_MSG=Test(s) failures encountered in PR" >> $GITHUB_ENV
fi
Expand Down Expand Up @@ -640,7 +639,7 @@ jobs:
id: generate_slack_report
if: ${{ env.SKIP_TESTS != 'true' && inputs.EXTERNAL_TO_CTDS != 'true' && (steps.upload_allure_report.outcome == 'success' || steps.upload_gh_action_logs.outcome == 'success') }}
continue-on-error: true # if this fails, we still need to run clean-up steps
run: poetry run python -m gen3_ci.scripts.generate_slack_report
run: uv run python -m gen3_ci.scripts.generate_slack_report

- name: Publish report to Slack
id: slack_notify
Expand All @@ -659,7 +658,7 @@ jobs:
continue-on-error: true # if this fails, we still need to run clean-up steps
run: |
echo -e "\n\n****** Running Analyze Failures using AI agent ******" >> logs/gh_action_logs.txt
poetry run python -m gen3_ci.scripts.analyze_failed_tests_using_ai_agent >> logs/gh_action_logs.txt 2>&1
uv run python -m gen3_ci.scripts.analyze_failed_tests_using_ai_agent >> logs/gh_action_logs.txt 2>&1
if [[ "$IS_NIGHTLY_RUN" == "true" ]]; then
DATE=$(date +%Y%m%d)
aws s3 cp logs/failure_analysis.txt s3://ci-allure-reports/nightly-run-$CI_ENV/$DATE/$RUN_NUM/$ATTEMPT_NUM/failure_analysis.txt >> logs/gh_action_logs.txt 2>&1
Expand Down Expand Up @@ -690,4 +689,4 @@ jobs:
- name: Cleanup
if: ${{ env.SKIP_TESTS != 'true' }}
run: |
poetry run python -m gen3_ci.scripts.teardown_ci_env
uv run python -m gen3_ci.scripts.teardown_ci_env