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Qasim-Hussain-Code / hpylori-pan-secretome

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A computational pipeline for the pangenomic evaluation of Helicobacter pylori Type IV Secretion Systems (cag-PAI) and flagellar macro-architectures utilizing generalized hidden Markov models.

computational-biology proteomics hidden-markov-models structural-bioinformatics pangenomics pathogenicity-island helicobacter-pylori macsyfinder pan-secretome txsscan cag-pai t4ss type-iv-secretion-system bacterial-secretion-systems flagellar-assembly diderm-pathogens
  • Updated Apr 12, 2026
  • Python

Qasim-Hussain-Code / s-pneumo-pan-secretome

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Pangenomic structural analysis of bacterial secretion machineries across Streptococcus pneumoniae isolates using optimized TXSScan hidden Markov models.

computational-biology bioinformatics-pipeline proteomics comparative-genomics hidden-markov-models pangenomics virulence-factors streptococcus-pneumoniae protein-translocation macsyfinder secretion-systems pan-secretome bacterial-pathogenesis txsscan
  • Updated Apr 12, 2026
  • Python

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