Automated RNA-seq reference builder for STAR and Salmon. Features container-aware memory detection, automatic Ensembl/GENCODE downloads, and version-controlled index generation.
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Updated
Dec 23, 2025 - Shell
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salmon-quant
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Analyzing isoform switches in Hürthle cell carcinoma, using Salmon & IsoformSwitchAnalyzeR
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Updated
Aug 13, 2026 - R
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