A tool for accurately detecting actively translating ORFs from Ribo-seq data
Scripts and instructions to apply RiboTIE on Ribo-seq data
ORF Quantification pipeline for Alternative Splicing
A comprehensive pipeline for Ribo-seq data analysis
A comprehensive analysis tool for Ribo-seq and small RNA-seq data
Scripts run to produce the RiboTIE paper
Comparing translation of open reading frames within individual transcripts
High-precision ribosome pause detection tool utilizing Negative Binomial modeling to optimize Z-scores and extract ML-ready contextual features from Ribo-seq data.
A toolbox for translatome profiling
Pipeline and scripts for the comparative analysis of ribosome profiling and matched RNA sequencing data between organs and across species.
A multi-omic bioinformatics pipeline interrogating viral translational hijacking in HCV-infected hepatoma cells. By integrating Ribosome Profiling and RNA-seq, it quantifies translational efficiency, maps ribosomal pause sites, and correlates translational stalling with RNA thermodynamic stability.
Reproducible run of the HRIBO Ribo-seq workflow on the Pseudomonas aeruginosa PAO1 case study under tight laptop resource limits.
Paired RNA-seq/Ribo-seq analysis of translational efficiency changes under nitrogen limitation in an archaeon.
A workflow to benchmark tools for differential translation efficiency analysis
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