A repository of pipelines for single-cell data in Nextflow DSL2. Here updated to make SCENIC single- and multi-run functional with modern v2 feather files
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Sep 30, 2024 - Nextflow
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pyscenic
Here are 3 public repositories matching this topic...
Single-Cell Atlas Builder is a modular platform for processing, integrating, and visualizing single-cell RNA-seq datasets. It combines FastAPI, Scanpy, and CellTypist for efficient analysis, with optional LLM-powered summaries for cluster and pathway interpretation.
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Nov 17, 2025 - Python
Modular single-cell transcriptomics pipelines for Alzheimer’s disease, integrating R and Python workflows.
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Jan 14, 2026 - R
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