Search protein structural motifs in the PDB.
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Updated
Sep 30, 2021 - Java
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protein-search
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Bioinformatics capstone of the UoA DI 'Software Development for Algorithmic Problems' trilogy. Protein remote-homolog search on SwissProt-50k via ESM-2 embeddings + 6 ANN methods (brute, LSH, Hypercube, IVF-Flat, IVF-PQ, Neural LSH), benchmarked against BLAST.
bioinformatics university-project nearest-neighbor-search blast swissprot protein-search homolog-detection approximate-nearest-neighbor esm-2 neural-lsh
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Updated
May 10, 2026 - Python
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