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Qasim-Hussain-Code / moshpit_whole_metagenome_analysis

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A reproducible QIIME 2 MOSHPIT pipeline that assembles, bins, dereplicates and taxonomically classifies whole‑metagenome data. Includes MEGAHIT assembly, MetaBAT 2 binning, BUSCO quality control, Sourmash dereplication and Kraken 2/Bracken abundance estimation. Ideal for microbial‑ecology, functional‑genomics and strain‑level profiling studies.

mag assembly metagenomics binning microbial-ecology qiime2 busco kraken2 bracken megahit shotgun-sequencing moshipt metabat2
  • Updated Jun 5, 2026
  • Python

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