microbiome-kg

MicrobiomeKG Visualization Tool. MBKGVisual reads compressed graph data (NODES and EDGES TSV files), builds a NetworkX graph, samples it using degree-based neighbor expansion (0.1% of nodes), and generates an interactive HTML visualization using Pyvis.

The up-to-date open-source configuration for MicrobiomeKG and MultiomicsKG builds. The current builds use the Tablassert knowledge extractor and are deployed to the NCATS Translator ecosystem via PloverDB.