adamhoffman2155-hue / project-2-scrnaseq-analysis Star 0 Code Issues Pull requests Single-cell RNA-seq analysis workflow (Seurat + Scanpy). QC → HVG → PCA → UMAP → Leiden → marker annotation. POC: 10x PBMC 3k — 2,643 cells post-QC, 7 Leiden clusters mapped to canonical T/B/Monocyte/NK lineages. bioinformatics scrna-seq single-cell umap seurat scanpy leiden-clustering Updated Apr 29, 2026 Python
pandeyravi15 / spatial_transcriptomics Star 0 Code Issues Pull requests End-to-end spatial transcriptomics pipeline for 10x Genomics Visium human brain glioblastoma — cell type annotation, GBM subtype characterization, and spatial neighborhood analysis python nextflow computational-biology neuroscience bioinformatics-pipeline allen-brain-atlas umap 10x-genomics glioblastoma spatial-transcriptomics tumor-microenvironment scanpy cell-type-annotation visium squidpy singlecell-data-analysis leiden-clustering moran-statistics Updated May 7, 2026 Jupyter Notebook