human-reference-atlas

Supporting information page for the "Robust and generalizable segmentation of human functional tissue units" paper

HRA ASCT+B Reporter

HRA Exploration and Registration User Interfaces

HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

HRA ASCT+B Validation Reports

HRAlit v0.5

hra-do-processor: HRA Digital Objects Processor

Human Reference Atlas Knowledge Graph

CCF Ontology v1.x

Supporting information page for "Human Digital Twin: Automated Cell Type Distance Computation and 3D Atlas Construction in Multiplexed Skin Biopsies" paper

CLI to simplify creating rui_locations.jsonld files

CLI to convert a simple CSV file into ASCT+B format

CCF Ontology v2.x

Comparing Azimuth data with ASCT+B Table data

Cell Neighborhood Analysis, based on John Hickey's code

asctb-ct-label-mapper: A package to recommend controlled vocabulary for annotations of scRNA-seq datasets. and thereby enable cross-dataset or cross-experiment comparison of annotations.

HRA Node Distance Visualization Web Component

HRA VCCF: Human Reference Atlas - Vasculature Common Coordinate Framework

Supporting information page for the "Function Tissue Units in the Human Reference Atlas" paper

Research code on Functional Tissue Units