Genome-wide extraction of real-valued signals hidden in noisy multisample HTS data
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Sep 6, 2026 - Python
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Here are 6 public repositories matching this topic...
Reproducible ChIP-seq analysis pipeline for GSE107221 using Galaxy, ChIPseeker and DiffBind to identify KDM5A-regulated H3K4me3 loci.
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Aug 5, 2026 - R
Snakemake workflow for G-quadruplex and R-loop CUT&Tag + RNA-seq integration in DHX36/FANCJ knockout mESCs — peak calling, sequence-level G4 topology, promoter-centric analysis (mm10)
workflow bioinformatics rna-seq snakemake genomics reproducible-research mouse r-loop cut-and-tag g-quadruplex dhx36 fancj
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Sep 15, 2026 - R
bowtie2 + MACS3 peak calling (Snakemake DAG, SLURM profile) on public CUT&Tag data -- honest CUT&RUN/CUT&Tag disclosure
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Jul 28, 2026 - Python
A python-driven CUT&RUN pipeline analysis developed at the Phillips Lab (University of Pennsylvania) tailored to batch execution at a HPC environment.
bioinformatics bioinformatics-pipeline bioinformatics-analysis bioinformatics-scripts chipseq cut-and-run cut-and-tag
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Sep 9, 2026 - R
High-performance C++ genomics library and Python extension for fast omics processing, sequence analysis, and stream profiling.
python bioinformatics cmake genomics cpp pypi wheel openmp computational-biology stream-processing htslib pybind11 sequence-analysis cut-and-tag
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Sep 23, 2026 - C++
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