An analysis and visualization platform for 'omics data
PanAnalyzer is a powerful and integrated bioinformatics pipeline designed to streamline the process of genome analysis, moving from raw sequencing data to sophisticated, interactive pangenome visualization.
Species-level pangenomes of the human oral microbiome constructed from eHOMD genomes using Anvi’o and reproducible Snakemake workflows.
This repository contains the computational pipeline and scripts formulated to conduct a comprehensive pangenome analysis of 36 complete Streptococcus pneumoniae genomes utilizing the Anvi'o (v9) bioinformatics platform.
Pangenomic analysis of Vibrio jasicida using the anvi'o platform. Identifies 6,853 gene clusters across eight genomes via DIAMOND and MCL clustering, resolving core, accessory, and strain-specific gene content.
A comprehensive, automated pan-genomic analysis pipeline for Bacteroides species, utilizing the Anvi'o platform to resolve core and accessory genomic architectures and infer evolutionary dynamics.
A reproducible pangenomic analysis of seven Chlamydia trachomatis strains using anvi'o v9, exploring core and accessory gene clusters across different serovars and clinical isolates.
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