A comprehensive and customizable R package for microbiome analysis.
code to reproduce AIH results
ESKRIM is a reference-free tool that compares microbial richness in shotgun metagenomic samples by counting k-mers
🦠Research project in Bioinformatics Institute 2023-2024
The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.
Microbiome Diversity Inspector - A platform for visual analysis of microbiome data.
Microbiome Data Analysis
Ordin: An open-source cross-platform electron desktop application for community ecology analysis.
TEIXEIRA, J. V. A.; SOUZA, E. C. Use of microbial fuel cell systems in wastewater treatment in connection with bioenergy generation. Desafios. Revista Interdisciplinar da Universidade Federal do Tocantins. Palmas, 2025. DOI: // Microbial fuel cells: Unveiling microbial diversity for sustainable wastewater treatment and bioenergy production
🦇🧫📊Study on bat gut shotgun metagenomics
Take advantage of the adehabitat packages in R to determine ecological community richness: including alpha, beta, and gamma diversity!
Code and statistical explanations for commonly used microbiome analyses
verificacao da homogeneidade biotica em bioma de restinga de mata atlantica atraves de testes de alfa e beta diversidade para riqueza e abundancia de especies
Alpha, beta and gamma diversities are computed and visualized using formulas and using the R package vegetarian.
metaGEENOME is a 16S rRNA metagenomic analysis tool that encompasses nearly all steps of downstream analysis.
16S sequencing analysis pipeline for low biomass samples
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