State-of-the-art bio cell models for inference and training. Minimal, readable, and produciton-ready.
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Oct 19, 2026 - Python
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aixbio
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The simplest repo for scGPT inference, finetuning and training.
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Oct 12, 2026 - Python
Reference-free, privacy-preserving wastewater pathogen surveillance for federated hospital networks. DNABERT-2 embeddings + Transformer-encoder VAE detect emerging anomaly clusters in unclassified reads. AIxBio Hackathon Track 2, Apart Research.
bioinformatics deep-learning metagenomics public-health anomaly-detection variational-autoencoder hackathon-project federated-learning pathogen-detection biosecurity wastewater-surveillance pandemic-preparedness dnabert aixbio
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Sep 28, 2026 - Jupyter Notebook
Investigation into ML explainability/interpretability techniques, analysing the behaviour of ML models trained to predict whether a medical abstract is or is not related to pathogens.
python nlp machine-learning scikit-learn transformers pytorch pubmed bag-of-words research-project bert lime interpretable-ai shap captum biosecurity model-explainability aixbio
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Sep 4, 2026 - Jupyter Notebook
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