Publicly available statistical genetics data and analysis. 1000G, HGDP, SGDP, and GIAB. Reproducible global ADMIXTURE with variable K.
Population structure and genetic differentiation analysis of African populations using 1000 Genomes Phase 3 chr22 data — PCA, ADMIXTURE, Fst, and CYP2D6/CYP2D7 pharmacogenomic relevance.
Replicating and extending Novembre et al. (2008) — end-to-end Python pipeline for human population structure analysis using 1000 Genomes Phase 1 chr22 data, with a within-Africa extension, Fst-based ancestry-informative marker identification, and an interactive Streamlit explorer.
Structural variant analysis of common disease-associated genes in 1000 Genomes long-read sequencing data
Personal genomics analysis toolkit: ingest consumer DNA raw data, impute against 1000 Genomes, and produce an evidence-graded ledger of pharmacogenomic, carrier-screening, trait, polygenic-score, and haplogroup findings — all locally.
Benchmarking forensic ancestry inference using AIM SNPs, machine learning and 1000 Genomes validation.
A screening pipeline that uses existing Oxford Nanopore long-read sequencing data from the 1000 Genomes Project to identify samples carrying specific copies of three genes of interest as cloning candidates.
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