Classic tiegcm dev#9

Open

timhoar wants to merge 176 commits intoClassicfrom

classic_tiegcm_dev

Commits on Jun 27, 2013

These are a first stab at supporting the AMSR-E brightness temperatures.
timhoar
committed

Commits on Jul 1, 2013

Tracking changes to the trunk. Mostly want the CESM_setup and assimilate scripts.
timhoar
committed
Preliminary use of the riadiative transfer model.
timhoar
committed

Commits on Jul 2, 2013

Commits on Jul 3, 2013

The grain size in CLM is microns, the RTM code needs meters.
timhoar
committed

Commits on Jul 12, 2013

test branch for Remote Memory Access test using MPI-2 Get() and Put() one-sided communication calls
nancycollins
committed

Commits on Jul 17, 2013

First hack through a distributed forward operator for identity obs only. Initial test on my machine ( 2 processors) : the first column of results matches obs_ens_handle%copies, the second does not…

kershaw-dart
authored and
kershaw-dart
committed

Commits on Jul 18, 2013

The 'wrong column' problem was caused by using a local variable number as a global variable number. Added a function to ensemble manager to calculate the global number from the local variable numbe…

kershaw-dart
authored and
kershaw-dart
committed
Committing to test on Yellowstone. Writes the two arrays of interest to a file (ignoring the auxiliary copies for now).

kershaw-dart
authored and
kershaw-dart
committed
Added timing for the two routines

kershaw-dart
authored and
kershaw-dart
committed

Commits on Jul 19, 2013

Prevented get_obs_ens_distrib_state from modifying any obs_ens_handle%vars. I think this was causing seg faults in filter assim (tricky because it only happened at some task counts - be aware in c…

kershaw-dart
authored and
kershaw-dart
committed

Commits on Jul 22, 2013

Changed MPI_DOUBLE_PRECISION to use datasize from mpi_utilities. This is so it can be easily tested with wrf. Put a dummy value in for global_ens_index.

kershaw-dart
authored and
kershaw-dart
committed

Commits on Jul 24, 2013

Single precision was not enough in the calculation of the element index. This lead to the incorrect column being grabbed in MPI get. Fix is to use double precision for the division. Added a repeat…

kershaw-dart
authored and
kershaw-dart
committed

Commits on Jul 26, 2013

Removed get_owner_of_element_state_vector, get_element_index. get_var_owner_index has this functionality (and does it better) already. Corrected the comments in get_var_owner_index and get_copy_o…

kershaw-dart
authored and
kershaw-dart
committed
Using my_vars(:) to give the global variable index. Ready for testing on Yellowstone

kershaw-dart
authored and
kershaw-dart
committed

Commits on Jul 29, 2013

This is the model that Tim Whitcomb of NRL used for his PhD thesis
timhoar
committed

Commits on Jul 30, 2013

Adding the NOGAPS interface routines developed in 2010 and 2011.
timhoar
committed

Commits on Aug 1, 2013

Commits on Aug 5, 2013

Removed the state array from the call sequence for the distributed forward operator.

kershaw-dart
authored and
kershaw-dart
committed

Commits on Aug 8, 2013

distributed version of get_expected_1d_integral added to obs_def_mod.f90. Loops around copies to calculate the 1d integral for each copy. Tested on my machine

kershaw-dart
authored and
kershaw-dart
committed

Commits on Aug 13, 2013

Moved mpi_win_create after the duplicate arrays is filled. This was creating a problem because the window was being written to during an exposure epoch. The debugging info is still in the code. A…

kershaw-dart
authored and
kershaw-dart
committed
Removed debug code from filter. Timing code still present. Code style change in obs_def_mod.f90 (:) for array operations.

kershaw-dart
authored and
kershaw-dart
committed

Commits on Aug 15, 2013

thanks to craig s. fixed a bug in getting the right copy
nancycollins
committed

Commits on Aug 19, 2013

Commits on Aug 20, 2013

Commits on Aug 21, 2013

Version generates correct answers.
timhoar
committed

Commits on Aug 23, 2013

Tracking changes to the trunk.
timhoar
committed

Commits on Aug 25, 2013

First go at distributed forward operator for WRF specific humidity. Changes in filter are just for timing. Obs_def_mod.f90 is committed to the repository because I have not changed preprocess. No…

kershaw-dart
authored and
kershaw-dart
committed

Commits on Aug 26, 2013

Commits on Aug 27, 2013

Commits on Sep 5, 2013

Commits on Sep 6, 2013

Commits on Sep 12, 2013

Tracking changes from the trunk.
timhoar
committed

Commits on Sep 13, 2013

Commits on Sep 21, 2013

Tracking changes to the trunk. Mostly making script consistent across models.
timhoar
committed

Commits on Sep 22, 2013

File renames to be CESM1_1_1_setup_pmo
timhoar
committed

Commits on Sep 25, 2013

WRF version of RMA. Bug fix for unique k loop. I had changed the loop to only do communication once for each unique level, rather than the for each ensemble, but I was not using the correct value …

kershaw-dart
authored and
kershaw-dart
committed
First commit of CAM distributed forward operator. Note, this is the same as the Lorenz96 and WRF code where you need to run preprocess then delete obs_def_mod.f90 and update it from the repository.…

kershaw-dart
authored and
kershaw-dart
committed

Commits on Sep 26, 2013

Removed the ps_distrib array. Building this was taking far too much time (~300 seconds). No need to build it for the distributed case, you can just grab the surface pressure you need for each obse…

kershaw-dart
authored and
kershaw-dart
committed

Commits on Sep 30, 2013

Added p_surf calculation for staggered grids. This has been tested on my machine with v_wind components. Note obs_def_mod.f90 is committed again. Same caveat as before, this is just a temporary mea…

kershaw-dart
authored and
kershaw-dart
committed

Commits on Oct 9, 2013

Folded the qc into get_obs_ens_distrib_state. Istatus changed to an ensemble size array. Note this commit is for CAM.

kershaw-dart
authored and
kershaw-dart
committed

Commits on Oct 15, 2013

First hack through distributed version of filter_assim. The distributed part is calculating the height in get_close_obs_distrib without having access to a var complete ensemble copy. This is reall…

kershaw-dart
authored and
kershaw-dart
committed

Commits on Oct 16, 2013

Commits on Dec 18, 2013

Bringing the tiegcm branch up to the trunk as of the Lanai release. Preparing to modify the
timhoar
committed

Commits on Dec 19, 2013

Implemented model_nml for single set of filenames to be shared
timhoar
committed

Commits on Dec 21, 2013

Compiles, and can run model_to_dart.f90.
timhoar
committed

Commits on Dec 23, 2013

Compiles and runs with the Intel Compiler on yellowstone.
timhoar
committed

Commits on Dec 27, 2013

Commits on Dec 30, 2013

The input namelist now REQUIRES 4 pieces of information for each input variable.
timhoar
committed

Commits on Jan 2, 2014

Added a stub for the model_interpolate test.
timhoar
committed

Commits on Jan 9, 2014

Commits on Jan 25, 2014

renamed the 'state_variables' to just 'variables' and added a fifth column to
timhoar
committed

Commits on Feb 14, 2014

This version can exercise model_to_dart and dart_to_model and
timhoar
committed

Commits on Apr 24, 2014

Keeping the tiegcm branch close to the trunk.
timhoar
committed

Commits on Apr 29, 2014

Commits on May 16, 2014

Much more thoroughly tested routine.
timhoar
committed

Commits on May 21, 2014

This version does not update the top level of the variables that
timhoar
committed

Commits on Jun 25, 2014

Converting the ZG variable directly to meters upon read.
timhoar
committed

Commits on Jan 6, 2015

Fix to the algorithm for the extrapolation of NE.
timhoar
committed

Commits on Feb 11, 2015

Adding build bits for obs_sequence_tool - a routine that is nice to have.
timhoar
committed

Commits on Feb 12, 2015

These have a cleaner mechanism for communicating the start/stop
timhoar
committed

Commits on Feb 24, 2015

Commits on Mar 10, 2015

Commits on Mar 11, 2015

These have interpolation capability necessary to determine the
timhoar
committed

Commits on Mar 12, 2015

This has the right constant value to define a column of stuff.
timhoar
committed

Commits on Mar 13, 2015

update with latest (doc only) changes to trunk
nancycollins
committed

Commits on Mar 25, 2015

Commits on Mar 27, 2015

Commits on Mar 30, 2015

This is the first crack at the documentation.
timhoar
committed

Commits on Apr 8, 2015

Fixed a potentially bad error in that the variables were still being read from
timhoar
committed

Commits on Apr 9, 2015

Using doxygen-style comments. Thats all.
timhoar
committed

Commits on Apr 30, 2015

updating the overview and references of the documentation

Tomoko Matsuo
authored and
Tomoko Matsuo
committed
Added my name as the DART contact for the model.
timhoar
committed
Adding a missing example namelist, and adding better logging in the
timhoar
committed
Fixed some characters in the references that did not render correctly.
timhoar
committed

Commits on Dec 9, 2015

fixing DARTSUP-247
timhoar
committed

Commits on May 17, 2016

Bringing up-to-date with respect to the trunk in preparation for
timhoar
committed

Commits on May 25, 2016

Adding the stub for the slant-path operator for electron densities.
timhoar
committed

Commits on May 26, 2016

Commits on Jun 10, 2016

Commits on Jun 13, 2016

Commits on Aug 24, 2017

Commits on Nov 24, 2020

Merge pull request #7 from gwbowden/classic_tiegcm_dev
timhoar
authored

Commits on Dec 1, 2020

Adding GOLD observation converters
George Bowden
committed

Commits on Dec 3, 2020

Avoid keeping .o files, since not compiling using debug, and delete unused obs_types from input file.
George Bowden
committed
Include the modified shell scripts used on Gadi.
George Bowden
committed
Error rather than message when too many levels.
George Bowden
committed
Merge pull request #8 from gwbowden/classic_tiegcm_dev
timhoar
authored

Commits on Dec 4, 2020

Setting return error code for GOLD_ON2COLUMN
timhoar
committed
Merge pull request #1 from timhoar/classic_tiegcm_dev
gwbowden
authored
Minor changes
George Bowden
committed
Merge remote-tracking branch 'origin/classic_tiegcm_dev' into classic_tiegcm_dev
George Bowden
committed
Fix error handling problem.
George Bowden
committed
Fixed null island problem.
George Bowden
committed

Commits on Dec 7, 2020

setting correct return status for GOLD_NEMAX operator
timhoar
committed

Commits on Dec 8, 2020

Commits on Jan 11, 2021

Minor modifications to help with testing.
George Bowden
committed

Commits on Jan 19, 2021

Commits on Mar 1, 2021

Commits on Mar 12, 2021

Commits on Mar 13, 2021

prototype assimilate script
timhoar
committed