Update Zarr to v3 - #185

Merged

eroell merged 26 commits into

mainfrom

Nov 4, 2025

Commits on Oct 29, 2025

CI check
eroell
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cf109b3
loosen in optional vitessce dependency as well
eroell
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07ea6e4
debug why we don't get a bug
eroell
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7b8a289

Commits on Oct 30, 2025

store commit; breaks
eroell
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c09e1e6

Commits on Oct 31, 2025

merge
eroell
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74eb762
new read_zarr and write_zarr
eroell
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485a234

Commits on Nov 2, 2025

expand tests zarr; enable nullable string used for categorical names; disable chunks arg in write_zarr
eroell
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a77b0ed
cleaner changelog
eroell
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7dbc662
fix test workflow package display?
eroell
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a3d6a33
fix test workflow package display?
eroell
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7cb4931
rtd build with minimal vitessce depndency?
eroell
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64db485
no vitessce check?
eroell
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36a9bbd
check docs
eroell
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087bbe4
check
eroell
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2cf790c
check
eroell
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a02022c
check
eroell
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b7d2e6c
revert
eroell
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c96f3f5
check only lamin hidden
eroell
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34ab1cf
no vitessce in docstring
eroell
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e52787a
updates
eroell
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796254c

Commits on Nov 3, 2025

Fix docs
flying-sheep
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549a11b
fmt
flying-sheep
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6281b26
allow write nullabe strings decorator
eroell
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86fd966
write zarr with auto sharding and chunking
eroell
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606ad91

Commits on Nov 4, 2025

write_zarr with arg chunks='auto'|'ehrdata_auto'
eroell
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f1af318
cleaner docstring
eroell
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2162ad1