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Keziming/atm/chem uci mosaic mam5 - #1

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keziming wants to merge 55 commits into
tangq:tangq/atm/UCI-chemfrom
E3SM-Project:keziming/atm/chemUCI-MOSAIC-MAM5
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Keziming/atm/chem uci mosaic mam5#1
keziming wants to merge 55 commits into
tangq:tangq/atm/UCI-chemfrom
E3SM-Project:keziming/atm/chemUCI-MOSAIC-MAM5

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Here I want to push my MAM5-UCI-MOSAIC branch to a E3SM fork.
If I choose keziming/E3SM as base repository, it shows can not merge automatically. Therefore, I choose Qi's fork, which has UCI-chem code.
Please let me know if this is a right choice. Thank you very much!

Hsiang-He Lee and others added 30 commits November 2, 2021 12:37
(cherry picked from commit ef910f8)
(cherry picked from commit da6ef40)

Co-authored-by: Hsiang-He Lee <lee1061@llnl.gov>
A system change on Cori changed the available versions of cmake.

This commit updates cmake from 3.20.2 to 3.21.3

[impact on BFB is uncertain]
The following namelist options have been added to control Cloud-J and
output related diagnostics:

do_cloudj_photolysis
do_cloudj_clouds
do_cloudj_aerosols
do_cloudj_lookup_diag
do_cloudj_aerosol_diag
do_cloudj_nocloud_diag

Aerosols are now mapped from MAM4 concentrations to existing Fast-J
aerosol types.  Some of the mapping is poor, eg sea-salt is given the
optical properties of sulfate aerosols. This aerosol capability has
also only had limited testing.  Hence, I recommend running without
aerosol opacities, but it should be functional, and the long-term goal
is to calculate the Fast-J optical properties in a way that is
consistent with MAM4.

NOTE: the filenames for Fast-J data files are still hard-coded.  This
will be fixed in a future commit.
Used MPASSI prescribed data ice mode in place of CICE, and reset
the default SSTICE data file for F20TR_chemUCI-Linozv2/3 compsets

[BFB] except for F20TR_chemUCI-Linozv2/3 compsets

Co-authored-by: Wuyin Lin <wlin@bnl.gov>
tangq and others added 25 commits April 16, 2022 12:54
…psets (#4894)

* Use MPASSI and update SSTICE data for F20TR_chemUCI-Linozv2/3

Used MPASSI prescribed data ice mode in place of CICE, and reset
the default SSTICE data file for F20TR_chemUCI-Linozv2/3 compsets

[BFB] except for F20TR_chemUCI-Linozv2/3 compsets

* Update SSTICE years for F20TR_chemUCI-Linozv2/3 compsets

Co-authored-by: Wuyin Lin <wlin@bnl.gov>
Wrong molecular weight was used in the previous version for the NO
biomass burning emissions. The new NO surface emission file fixs it and
hence the new emiss_bb is higher than the old version.

[Non-BFB] - Non Bit-For-Bit for chemUCI compsets
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6 participants