fix(deps): update dependency @stencila/encoda to v0.121.6

[renovate]

This PR contains the following updates:

Package	Change	Age	Confidence
@stencila/encoda	0.116.1 → 0.121.6

---

Release Notes

stencila/encoda (@​stencila/encoda)

v0.121.6

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Bug Fixes

• JATS: Fix loss of content when <list-item><label> has trailing space (7599817)

v0.121.5

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Bug Fixes

• JATS: Decode <supplementary-material> to a Link; ensure BlockContent from <back> sections (32e1ce5)
• JATS: Only add email from <corresp> if no emails for author in <contrib> (e51dd01)
• JATS: Prepend <list-item><label> to first paragraph (7afe909)
• JATS: Refine rules around using <fpage> for eLocation; do not require pageStart and pageEnd to be ints (0c3236c)

v0.121.4

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Bug Fixes

• JATS: Do not duplicate ListItems when decoding nested lists (abb3a18)

v0.121.3

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Bug Fixes

• Deps: Run npm audit fix (8620dff)
• Deps: Upgrade various dependencies (a08cfb7)

v0.121.2

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Bug Fixes

• JATS: Ensure a space after labels in author notes (66d93f9)
• JATS: Reset section depth when decoding figure caption (976e127)

v0.121.1

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Bug Fixes

• Dependencies: Update dependencies (f404d16)
• JATS: Decode all content form abstract (c0bfc2b)
• JATS: Extract all images in <table-wrap> element that has more than one <graphic> (ffe5253)
• JATS: Extract elocation when in <fpage> element (d6c8a08)
• JATS: Store list type to meta.listType (2e6971c)

v0.121.0

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Bug Fixes

• Dependencies: Update dependencies (b9a8079)

Features

• JATS: Extract <ref><label> elements into the meta.label property of the reference. (931cbb1)

v0.120.0

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Bug Fixes

• Dependencies: NPM audit fix (aed1724)
• Deps: Update content-type (6704c3a)
• JATS: Allow for no element; update snapshots (cde3384)
• JATS: Decode <fig> elements as a Table if label starts with 'Table' (2ada6a6)
• JATS: Decode <notes> into an article's about property (ec410f0)
• JATS: Retain affiliation content not in element (cdc4fc1)
• JATS: Treat like other elements (cd9dbc6)
• JATS: Use correct tag name for (3bd4c5d)
• Reshaping: Only convert an image paragraph into a figure if a caption is found\n\nCloses elifesciences/enhanced-preprints-issues#362 (ec09ec4)

Features

• JATS: Capture <elocation-id> in references (6bd2758)

0.119.7 (2023-01-04)

Bug Fixes

• Dependencies: NPM audit fix (3ff593b)
• Dependencies: Update json5 and tar (7df51ca)

0.119.6 (2022-11-21)

Bug Fixes

• Release: Fix release build (67648c6)

0.119.5 (2022-11-21)

Bug Fixes

• Build: Reinstate install script (b7fe89c)
• Convert function: Do not default to outputting to stdout when outputPaths is undefined (0349fbf)
• Convert function: Return content when no output path defined (0ea7388)
• Dependencies: Minor version upgrades of dependencies (db7d7dd)
• Dependencies: Updates with npm audit fix (d717531)
• Fix typings (mostly to do with Error) and update some dev dependencies (fa1fad9)
• JATS: Also decode <string-name> elements as authors (83086a3)
• JATS: Decode <table-wap> with <graphic> to a Figure (dc48537)
• JATS: Decode backmatter sections; convert all caps headings to sentence case (79ed21f)
• JATS: Extract acknowledgements from <back> (e5c9db2)
• JATS: Extract author ORCIDs (3e161c5)
• JATS: Follow xrefs to corresp element to capture corresponding author emails (d3e0057)
• JATS: Insert ThematicBreak before back sections (5971de5)
• JATS: Match corresponding email to author name/s (3effdaf)
• Release: Install missing release dependencies (d6ac4b9)

0.119.4 (2021-11-16)

Bug Fixes

• Build: Remove deprecated script (b0c7a4a)

0.119.3 (2021-11-16)

Bug Fixes

• Dependencies: Update deps (a9f0330)

0.119.2 (2021-11-16)

Bug Fixes

• dependencies: update dependency @​stencila/thema to ^2.24.4 (a01cdd0)
• dependencies: update dependency mime to ^2.6.0 (3465a03)
• dependencies: update dependency pdf-lib to ^1.17.1 (519f986)
• dependencies: update dependency xlsx to ^0.17.4 (b1ae255)
• Dependencies: Update deps (eec2e59)

0.119.1 (2021-11-16)

Bug Fixes

• dependencies: update dependency fp-ts to ^2.11.5 (ae2eb6f)
• dependencies: update dependency github-slugger to ^1.4.0 (a72887d)
• dependencies: update dependency jsdom to ^16.7.0 (ecae3da)
• dependencies: update dependency parse-full-name to ^1.2.6 (0591f63)
• dependencies: update dependency pdf-lib to ^1.17.0 (2f2fadd)
• dependencies: update dependency puppeteer to ^10.4.0 (90d7980)
• dependencies: update dependency tar to ^6.1.11 (44ed366)
• dependencies: update dependency xlsx to ^0.17.3 (1468046)

v0.119.7

Compare Source

Bug Fixes

• Dependencies: NPM audit fix (3ff593b)
• Dependencies: Update json5 and tar (7df51ca)

v0.119.6

Compare Source

Bug Fixes

• Release: Fix release build (67648c6)

v0.119.2

Compare Source

Bug Fixes

• dependencies: update dependency @​stencila/thema to ^2.24.4 (a01cdd0)
• dependencies: update dependency mime to ^2.6.0 (3465a03)
• dependencies: update dependency pdf-lib to ^1.17.1 (519f986)
• dependencies: update dependency xlsx to ^0.17.4 (b1ae255)
• Dependencies: Update deps (eec2e59)

v0.119.1

Compare Source

Bug Fixes

• dependencies: update dependency fp-ts to ^2.11.5 (ae2eb6f)
• dependencies: update dependency github-slugger to ^1.4.0 (a72887d)
• dependencies: update dependency jsdom to ^16.7.0 (ecae3da)
• dependencies: update dependency parse-full-name to ^1.2.6 (0591f63)
• dependencies: update dependency pdf-lib to ^1.17.0 (2f2fadd)
• dependencies: update dependency puppeteer to ^10.4.0 (90d7980)
• dependencies: update dependency tar to ^6.1.11 (44ed366)
• dependencies: update dependency xlsx to ^0.17.3 (1468046)

v0.119.0

Compare Source

Bug Fixes

• JATS: Update tests (40ad744)

Features

• JATS: Add decoder for <disp-quote> (5423150)

0.118.1 (2021-07-22)

Bug Fixes

• Install: Move patch-package to dependencies (03dbd9d), closes #​965

v0.118.1

Compare Source

Bug Fixes

• Install: Move patch-package to dependencies (03dbd9d), closes #​965

v0.118.0

Compare Source

Bug Fixes

• dependencies: update dependency plotly.js-dist to ^1.58.5 (8e45c21)
• dependencies: update dependency puppeteer to ^10.1.0 (7f59669)
• Deps: Roll back @​types/unist (fade141)
• JATS: Tweak comment (ab8be66)

Features

• JATS: Add label field to MathBlocks (7d41d9d)
• JATS: Read permissions element from figures (e6bec3f)

0.117.4 (2021-06-23)

Bug Fixes

• Binaries: Bundle Pandoc and Chromium (0a0ed52)

0.117.3 (2021-06-22)

Bug Fixes

• Deps: Patch jsonld (322a314)

0.117.2 (2021-06-22)

Bug Fixes

• CLI: Add shebang so that bin command works (afc2bf2)
• dependencies: update dependency js-beautify to ^1.14.0 (8a16f3a)

0.117.1 (2021-06-21)

Bug Fixes

• Account for TableCell content potentially being undefined (758b6ea)
• Use MediaObject mediaType rather than format; fix for content types (186096e)
• Build: Avoid src in dist folder (0105b6a), closes /github.com/stencila/encoda/pull/957#issue-671741247
• Build: Do not use compression withing binary (c0517d4)
• Build: Include dist js in scripts (d984c93)
• Coercion: Default to no coercion (224a378), closes #​902
• dependencies: update dependency @​stencila/thema to ^2.24.2 (b4bf10b)
• dependencies: update dependency globby to ^11.0.4 (773a2f9)
• dependencies: update dependency papaparse to ^5.3.1 (99ab93f)
• dependencies: update dependency puppeteer to v10 (de23f29)
• dependencies: update dependency trash to ^7.2.0 (dda2194)
• Deps: Add Schema to peerDependencies and update type guards (fbd0214)
• Deps: Use Schema 1.9.0 (13a347a)
• GDoc: Use isA instead of isParagraph (ffc83fc)
• HTML & JATS: Use Mark.type instead of type map (712d2f5)
• Manifest: Fix issue with the way that the plugin manifest was generated (017aad3)
• Typings: Fixes for changes in typing of CreativeWork content (1a0fe89)

v0.117.4

Compare Source

Bug Fixes

• Binaries: Bundle Pandoc and Chromium (0a0ed52)

v0.117.3

Compare Source

Bug Fixes

• Deps: Patch jsonld (322a314)

v0.117.2

Compare Source

Bug Fixes

• CLI: Add shebang so that bin command works (afc2bf2)
• dependencies: update dependency js-beautify to ^1.14.0 (8a16f3a)

v0.117.1

Compare Source

Bug Fixes

• Account for TableCell content potentially being undefined (758b6ea)
• Use MediaObject mediaType rather than format; fix for content types (186096e)
• Build: Avoid src in dist folder (0105b6a), closes /github.com/stencila/encoda/pull/957#issue-671741247
• Build: Do not use compression withing binary (c0517d4)
• Build: Include dist js in scripts (d984c93)
• Coercion: Default to no coercion (224a378), closes #​902
• dependencies: update dependency @​stencila/thema to ^2.24.2 (b4bf10b)
• dependencies: update dependency globby to ^11.0.4 (773a2f9)
• dependencies: update dependency papaparse to ^5.3.1 (99ab93f)
• dependencies: update dependency puppeteer to v10 (de23f29)
• dependencies: update dependency trash to ^7.2.0 (dda2194)
• Deps: Add Schema to peerDependencies and update type guards (fbd0214)
• Deps: Use Schema 1.9.0 (13a347a)
• GDoc: Use isA instead of isParagraph (ffc83fc)
• HTML & JATS: Use Mark.type instead of type map (712d2f5)
• Manifest: Fix issue with the way that the plugin manifest was generated (017aad3)
• Typings: Fixes for changes in typing of CreativeWork content (1a0fe89)

v0.117.0

Compare Source

Bug Fixes

• More fixes for changes in types (e4eb1d7)
• Upgrade to latest Schema version (1d9f7c3)
• dependencies: update dependency @​stencila/schema to ^1.7.1 (5aa0c3c)
• dependencies: update dependency citation-js to ^0.5.1 (6c6da39)
• dependencies: update dependency jsdom to ^16.6.0 (edbbdf3)
• dependencies: update dependency xlsx to ^0.17.0 (a5a59ae)
• IPYNB: Do not validate notebooks (c77e44a)
• Reshape: Apply rules to any inline content, not just paragraphs (e805b60)

Features

• Plugin: Add codemeta.json and setup to act as a plugin (ce34372)

0.116.1 (2021-05-10)

Bug Fixes

• dependencies: update dependency async-lock to ^1.3.0 (dea118f)
• Deps: Update various dependencies (ab1f903)

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⚠ Artifact update problem

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File name: worker/package-lock.json

npm notice 
npm notice New major version of npm available! 8.19.4 -> 9.6.7
npm notice Changelog: <https://github.com/npm/cli/releases/tag/v9.6.7>
npm notice Run `npm install -g npm@9.6.7` to update!
npm notice 
npm ERR! code ERESOLVE
npm ERR! ERESOLVE unable to resolve dependency tree
npm ERR! 
npm ERR! While resolving: undefined@undefined
npm ERR! Found: @stencila/schema@1.5.3
npm ERR! node_modules/@stencila/schema
npm ERR!   @stencila/schema@"1.5.3" from the root project
npm ERR! 
npm ERR! Could not resolve dependency:
npm ERR! peer @stencila/schema@"^1.9.0" from @stencila/encoda@0.121.6
npm ERR! node_modules/@stencila/encoda
npm ERR!   @stencila/encoda@"0.121.6" from the root project
npm ERR! 
npm ERR! Fix the upstream dependency conflict, or retry
npm ERR! this command with --force, or --legacy-peer-deps
npm ERR! to accept an incorrect (and potentially broken) dependency resolution.
npm ERR! 
npm ERR! See /tmp/worker/cf783e/6475a0/cache/others/npm/eresolve-report.txt for a full report.

npm ERR! A complete log of this run can be found in:
npm ERR!     /tmp/worker/cf783e/6475a0/cache/others/npm/_logs/2023-05-28T09_36_17_396Z-debug-0.log

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⚠️ Artifact update problem

Renovate failed to update an artifact related to this branch. You probably do not want to merge this PR as-is.

♻ Renovate will retry this branch, including artifacts, only when one of the following happens:

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The artifact failure details are included below:

File name: worker/package-lock.json

npm ERR! code ERESOLVE
npm ERR! ERESOLVE unable to resolve dependency tree
npm ERR! 
npm ERR! While resolving: undefined@undefined
npm ERR! Found: @stencila/schema@1.5.3
npm ERR! node_modules/@stencila/schema
npm ERR!   @stencila/schema@"1.5.3" from the root project
npm ERR! 
npm ERR! Could not resolve dependency:
npm ERR! peer @stencila/schema@"^1.9.0" from @stencila/encoda@0.121.6
npm ERR! node_modules/@stencila/encoda
npm ERR!   @stencila/encoda@"0.121.6" from the root project
npm ERR! 
npm ERR! Fix the upstream dependency conflict, or retry
npm ERR! this command with --force, or --legacy-peer-deps
npm ERR! to accept an incorrect (and potentially broken) dependency resolution.
npm ERR! 
npm ERR! See /runner/cache/others/npm/eresolve-report.txt for a full report.

npm ERR! A complete log of this run can be found in:
npm ERR!     /runner/cache/others/npm/_logs/2026-09-03T19_34_03_324Z-debug-0.log