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softnanolab / bagel Public

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Pull requests list

feat: add GRAVYHydrophobicEnergy energy term

#125 opened Mar 26, 2026 by quark-knight • Draft

7

feat: add YAML run config system, CLI, and automatic minimizer config export

#123 opened Feb 26, 2026 by jakublala

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fix: hydrophobic energy does not return nan when no hydrophobic residues

#122 opened Feb 3, 2026 by jakublala

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[WIP] feat: migration to boileroom v0.3

#107 opened Nov 25, 2025 by jakublala • Draft

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