v0.3.0.3

[0.3.0.3] - 2026-03-04

• 0.3.0.1 by @sinanugur in #22
• Update conf.py by @sinanugur in #23
• version 0.3.0.2 update by @sinanugur in #24
• 0.3.0.3 version by @sinanugur in #25

Full Changelog: v0.3.0...v0.3.0.3

v0.3.0

[0.3.0] - 2025-05-14

Changed

• MirGeneDB v3.0
• Proto: 449
• Deutero: 837
• Combined: 1293
• Python, Bedtools, Infernal, Snakemake and dependency updates
• Seed match bug fixes.
• Seed file updates.
• Requirements.txt and environment.yml update.
• Losses bug fixes.
• Clean .snakemake directory after each run.

Added

• Now incE is a cli parameter.
• Print basic results.

What's Changed

• update devel branch by @sinanugur in #18
• 0.3.0 update by @sinanugur in #19
• Update README.md by @sinanugur in #20
• Update README.md by @sinanugur in #21

Full Changelog: v0.2.13...v0.3.0

v0.2.13

[0.2.13] - 2024-02-02

Changed

• cmsearch --incE 0.2 argument is added to the cmsearch command.
• fewer than 50 nucleotides are not considered as a hit anymore.
• GFF files have "MirMachine" and "microRNA" fields that replaced the previous fields.
• Some bug fixes and improvements.

Added

• microRNA score reported in GFF files.
• microRNA losses reported in GFF files
• Seed match reported in FASTA headers with seeds.

v0.2.12

Minor updates on heatmap files. Similar functionality to the previous release.

v0.2.11.2022

It is highly recommended to use this version. It is based on the latest version of MirGeneDB and a few features that were missing before. We already submitted this to Bioconda so if you pull the latest release or update, it should not be a problem.

v0.2.11.2

New features and exception handling.

v0.2.11

Some features were added.

v0.2.10

versioning

v0.2.1a

There might be some bugs.

v0.1.31

Same with previous.