Skip to content

Wrap getAFIs and getMIs calls in permuteOnce.mgcfa and permuteOnce.mimic with tryCatch (closes #159) #160

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
Shotgunosine wants to merge 2 commits into
base: master
Choose a base branch
from
Open

Wrap getAFIs and getMIs calls in permuteOnce.mgcfa and permuteOnce.mimic with tryCatch (closes #159) #160

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
fa55b94
try to fix unary returns
Shotgunosine May 27, 2026
db294f2
clean typos
Shotgunosine May 27, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
66 changes: 48 additions & 18 deletions semTools/R/permuteMeasEq.R
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1412,22 +1412,37 @@ permuteOnce.mgcfa <- function(i, d, G, con, uncon, null, param, freeParam,
availableArgs$con <- out0
if (exists("out1")) availableArgs$uncon <- out1
if (exists("out.null")) availableArgs$null <- out.null
AFI <- do.call(getAFIs, availableArgs)
# Wrap getAFIs so a failure doesn't kill the worker
AFI <- tryCatch(
do.call(getAFIs, availableArgs),
error = function(e) {
allAFIs <- c(AFIs, moreAFIs)
out <- rep(NA_real_, sum(!is.na(allAFIs)))
names(out) <- allAFIs[!is.na(allAFIs)]
out
}
)
## save max(MI) if !is.null(param)
if (is.null(param)) {
MI <- NULL
} else {
MI <- max(do.call(getMIs, c(availableArgs, modelType = "mgcfa"))$X2)
# Wrap getMIs so a failure doesn't kill the worker
MI <- tryCatch(
max(do.call(getMIs, c(availableArgs, modelType = "mgcfa"))$X2),
error = function(e) NA_real_
)
}
## anything extra?
if (!is.null(extra)) {
extraArgs <- formals(extra)
neededArgs <- intersect(names(extraArgs), names(availableArgs))
extraArgs <- do.call(c, lapply(neededArgs, function(nn) availableArgs[nn]))
extraOut <- do.call(extra, extraArgs)
## coerce extraOut to data.frame
if (!is.list(extraOut)) extraOut <- as.list(extraOut)
extra.obs <- data.frame(extraOut)
extra.obs <- tryCatch({
extraArgs <- formals(extra)
neededArgs <- intersect(names(extraArgs), names(availableArgs))
extraArgs <- do.call(c, lapply(neededArgs, function(nn) availableArgs[nn]))
extraOut <- do.call(extra, extraArgs)
## coerce extraOut to data.frame
if (!is.list(extraOut)) extraOut <- as.list(extraOut)
data.frame(extraOut)
}, error = function(e) NA)
} else extra.obs <- data.frame(NULL)
}
options(warn = old_warn)
Expand Down Expand Up @@ -1509,21 +1524,36 @@ permuteOnce.mimic <- function(i, d, G, con, uncon, null, param, freeParam,
} else {
availableArgs$con <- out0
if (exists("out.null")) availableArgs$null <- out.null
AFI <- do.call(getAFIs, availableArgs)
# Wrap getAFIs so errors don't kill worker
AFI <- tryCatch(
do.call(getAFIs, availableArgs),
error = function(e) {
allAFIs <- c(AFIs, moreAFIs)
out <- rep(NA_real_, sum(!is.na(allAFIs)))
names(out) <- allAFIs[!is.na(allAFIs)]
out
}
)
if (is.null(param)) {
MI <- NULL
} else {
MI <- max(do.call(getMIs, c(availableArgs, modelType = "mimic"))$X2)
# wrap getMIs so errors don't kill worker
MI <- tryCatch(
max(do.call(getMIs, c(availableArgs, modelType = "mimic"))$X2),
error = function(e) NA_real_
)
}
## anything extra?
if (!is.null(extra)) {
extraArgs <- formals(extra)
neededArgs <- intersect(names(extraArgs), names(availableArgs))
extraArgs <- do.call(c, lapply(neededArgs, function(nn) availableArgs[nn]))
extraOut <- do.call(extra, extraArgs)
## coerce extraOut to data.frame
if (!is.list(extraOut)) extraOut <- as.list(extraOut)
extra.obs <- data.frame(extraOut)
extra.obs <- tryCatch({
extraArgs <- formals(extra)
neededArgs <- intersect(names(extraArgs), names(availableArgs))
extraArgs <- do.call(c, lapply(neededArgs, function(nn) availableArgs[nn]))
extraOut <- do.call(extra, extraArgs)
## coerce extraOut to data.frame
if (!is.list(extraOut)) extraOut <- as.list(extraOut)
data.frame(extraOut)
}, error = function(e) NA)
} else extra.obs <- data.frame(NULL)
}
options(warn = old_warn)
Expand Down
Loading