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1. repbox repbox Public

   A Python pipeline combining family-specific transposable element detection methods into a single user-friendly toolbox. Outperforms RepeatModeler on classification breadth and TE family diversity i…

   Python 6 3

2. veridian veridian Public

   Corpus-grounded research cognition engine: interactive terrain mapping, cluster summaries, and reflective reasoning workflows.

   HTML

3. topos topos Public

   A stability-first framework for AI-augmented discovery in high-dimensional biological data. Enforces go/kill criteria, multi-family manifold robustness, cross-modal validation, and evidence-gated f…

   Shell