scverse · flying-sheep · Jul 29, 2025 · Jul 29, 2025 · Jul 29, 2025 · Jul 29, 2025
diff --git a/content/about/code_of_conduct/_index.md b/content/about/code_of_conduct/_index.md
@@ -35,4 +35,4 @@ The group is making decisions independently from the project, PyData, NumFOCUS o
 
 You can learn more about the current group members, as well as the reporting procedure on the [NumFOCUS Code of Conduct][] page.
 
-[NumFOCUS Code of Conduct](https://numfocus.org/code-of-conduct)
+[NumFOCUS Code of Conduct]: https://numfocus.org/code-of-conduct
diff --git a/content/about/roles/_index.md b/content/about/roles/_index.md
@@ -27,7 +27,7 @@ among other possibilities.
 Any community member can become a contributor, and all are encouraged to do so.
 By contributing to the project, community members can directly help to shape its future.
 
-All community members are required to adhere to our [code of conduct](https://scverse.org/about/code_of_conduct/).
+All community members are required to adhere to our [code of conduct](/about/code_of_conduct/).
 Potential contributors are encouraged to read the [Contributing Guide](https://scanpy.readthedocs.io/en/stable/dev/index.html).
 
 A community member becomes a contributor when the following criteria are met:

diff --git a/content/blog/hello-world.md b/content/blog/hello-world.md
@@ -26,7 +26,7 @@ There are already a few visible outcomes of our joint work including improved
 [mudata documentation](https://mudata.readthedocs.io/en/latest/). Additionally, 
 [scvi-tools is now using MuData](https://github.com/scverse/scvi-tools/pull/1444) for the representation of multimodal data. 
 [Scanpy has gained new workshop notebooks](https://github.com/scverse/scanpy-tutorials/pull/52), and, moreover, we have started 
-[a collection of learning resources for scverse libraries](https://scverse.org/learn/).
+[a collection of learning resources for scverse libraries](/learn/).
 We've also prepared 
 [a template for developers](https://github.com/scverse/cookiecutter-scverse) 
 to help them to jump-start their new libraries.
@@ -35,7 +35,7 @@ to help them to jump-start their new libraries.
 
 **scverse** is explicitly an effort beyond just a single research group.
 As a community effort we strive for interoperability, shared growth, and democratized governance.
-In our initial form, we have divided responsibilities into several [roles](https://scverse.org/people/), including:
+In our initial form, we have divided responsibilities into several [roles](/people/), including:
 
 [Isaac Virshup](https://github.com/ivirshup), [Danila Bredikhin](https://github.com/gtca) and [Lukas Heumos](https://github.com/Zethson) form the steering committee and also belong to the core developers together with [Adam Gayoso](https://github.com/adamgayoso), [Giovanni Palla](https://github.com/giovp), [Gregor Sturm](https://github.com/grst), and [Ilia Kats](https://github.com/ilia-kats). The core developers have made significant contributions to the ecosystem and are jointly developing and maintaining the major libraries.
 

diff --git a/content/events/2022_05_hackathon.md b/content/events/2022_05_hackathon.md
@@ -12,7 +12,7 @@ The scverse hackathon is free. The event was invite only. We will try to make fu
 
 ## Hackathon checklist
 
-- Check that you agree with the [scverse code of conduct](https://scverse.org/about/code_of_conduct/).
+- Check that you agree with the [scverse code of conduct](/about/code_of_conduct/).
 - Ensure that you have a [Github](https://github.com/) account.
 - Join our [zulip](https://scverse.zulipchat.com/) where you'll be added to the hackathon stream. [Say hi](https://scverse.zulipchat.com/#narrow/stream/319076-introductions) if this is your first time on the scverse zulip!
 - Have [python](https://www.python.org/) and any scverse package that you might work on installed.
diff --git a/content/events/2022_12_hackathon.md b/content/events/2022_12_hackathon.md
@@ -12,7 +12,7 @@ The scverse hackathon is free. The event was invite only. We will try to make fu
 
 ## Hackathon checklist
 
-- Check that you agree with the [scverse code of conduct](https://scverse.org/about/code_of_conduct/).
+- Check that you agree with the [scverse code of conduct](/about/code_of_conduct/).
 - Ensure that you have a [Github](https://github.com/) account.
 - Join our [zulip](https://scverse.zulipchat.com/) where you'll be added to the hackathon stream. [Say hi](https://scverse.zulipchat.com/#narrow/stream/319076-introductions) if this is your first time on the scverse zulip!
 - Have [python](https://www.python.org/) and any scverse package that you might work on installed.
diff --git a/content/events/2023_04_hackathon.md b/content/events/2023_04_hackathon.md
@@ -71,7 +71,7 @@ See [this hackmd](https://hackmd.io/JTTFFI6kRHm2U7WSpsWJjg) for more information
 
 ## Hackathon checklist
 
-- Check that you agree with the [scverse code of conduct](https://scverse.org/about/code_of_conduct/).
+- Check that you agree with the [scverse code of conduct](/about/code_of_conduct/).
 - Ensure that you have a [Github](https://github.com/) account.
 - Join our [zulip](https://scverse.zulipchat.com/) where you'll be added to the hackathon stream. [Say hi](https://scverse.zulipchat.com/#narrow/stream/319076-introductions) if this is your first time on the scverse zulip!
 - Have [python](https://www.python.org/) and any scverse package that you might work on installed.
diff --git a/content/events/2024_09_conference.md b/content/events/2024_09_conference.md
@@ -7,6 +7,6 @@ draft = false
 
 Join us for the first scverse conference taking place from **Tuesday, September 10** to **Thursday, September 12** in **Munich, Germany**. Stay tuned for the registrations, speaker announcements, and more!
 
-[The registration is now open!](https://scverse.org/conference2024/)
+[The registration is now open!](/conference2024/)
 
-<a href="https://scverse.org/conference2024/"> <img src="/img/events/2024_09_conference_savethedate.jpeg" style="max-width: 100%;" alt="Save the date info card, highlighting speakers and workshops as well as the September 10-12th date and Munich location" /> </a>
+<a href="/conference2024/"> <img src="/img/events/2024_09_conference_savethedate.jpeg" style="max-width: 100%;" alt="Save the date info card, highlighting speakers and workshops as well as the September 10-12th date and Munich location" /> </a>
diff --git a/content/events/_index.md b/content/events/_index.md
@@ -9,7 +9,7 @@ everyone! If you are new to scverse, these meetings are a great way to get to kn
 the people behind the project. 
 
 We usually start off the meetings with a short presentation about a development-related
-topic or a new [ecosystem package](https://scverse.org/packages/#ecosystem). 
+topic or a new [ecosystem package](/packages/#ecosystem). 
 
 The meetings have an [open agenda](https://hackmd.io/VfVLKb3ETGKN2j_7tn8ZJQ?edit). If
 you would like to bring up a topic, feel free to add it before or during the meeting!

diff --git a/content/learn/_index.md b/content/learn/_index.md
@@ -39,8 +39,8 @@ You can also find recordings of past talks and workshops on our [YouTube channel
 	name = "Other modalities"
 	[[tutorials.section]]
 	name = "TCR and BCR receptor sequencing with scirpy"
-	url = "https://scverse.org/scirpy/latest/tutorials/tutorial_3k_tcr.html"
-	img = "https://scverse.org/scirpy/latest/_images/tutorials_tutorial_3k_tcr_86_1.png"
+	url = "https://scirpy.scverse.org/en/latest/tutorials/tutorial_3k_tcr.html"
+	img = "https://scirpy.scverse.org/en/latest/_static/scirpy_logo.png"
 	[[tutorials.section]]
 	name = "ATAC-seq"
 	url = "https://muon-tutorials.readthedocs.io/en/latest/single-cell-rna-atac/pbmc10k/2-Chromatin-Accessibility-Processing.html"

diff --git a/layouts/blog/list.html b/layouts/blog/list.html
@@ -1,7 +1,7 @@
 {{ define "main" }}
   <h1>Blog</h1>
   {{ range .Pages }}
-    <a href="{{ .Permalink }}">
+    <a href="{{ .RelPermalink }}">
       <article class="page-item">
         <div class="page-item-date">
           <span>{{ .Date.Format "January 02, 2006" }}</span>

diff --git a/layouts/events/list.html b/layouts/events/list.html
@@ -7,7 +7,7 @@ <h1>{{ .Title }}</h1>
   {{ with where .Data.Pages "Date.Unix" ">" now.Unix }}
     <h2>Upcoming events</h2>
     {{ range . }}
-      <a href="{{ .Permalink }}">
+      <a href="{{ .RelPermalink }}">
         <article class="page-item">
           <div class="page-item-date">
             <span>{{ .Date.Format "January 02, 2006" }}</span>
@@ -27,7 +27,7 @@ <h2>{{ .Title }}</h2>
 {{ define "main" }}
   <h2>Past events</h2>
   {{ range where .Data.Pages "Date.Unix" "<=" now.Unix }}
-    <a href="{{ .Permalink }}">
+    <a href="{{ .RelPermalink }}">
       <article class="page-item">
         <div class="page-item-date">
           <span>{{ .Date.Format "January 02, 2006" }}</span>
Original file line number	Diff line number	Diff line change
Expand Up		@@ -35,4 +35,4 @@ The group is making decisions independently from the project, PyData, NumFOCUS o

		You can learn more about the current group members, as well as the reporting procedure on the [NumFOCUS Code of Conduct][] page.

		[NumFOCUS Code of Conduct](https://numfocus.org/code-of-conduct)
		[NumFOCUS Code of Conduct]: https://numfocus.org/code-of-conduct