perf(build): enable geometric LCP memoization for genome indexing - #228

Merged

rob-p merged 9 commits into

mainfrom

codex/geometric-memoization

Aug 27, 2026

Commits on Aug 13, 2026

perf: enable geometric LCP memoization for genome indexing
rob-p
committed
049ff88
chore: require caps-sa 0.7
rob-p
committed
859ac80
ci: pin caps-sa 0.7 to its release commit
rob-p
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5fbc0c1
Use published caps-sa 0.7 API
rob-p
committed
a739e1f

Commits on Aug 27, 2026

Merge main into codex/geometric-memoization
BenjaminDEMAILLE
committed
fcc1f2a
fix(index): set STAR's SAiMarkNbit N-flag when building SAindex

rob-p
and
claude
committed
ea1a359
fix(sjdb): match STAR's junction set and fromGTF list exactly

rob-p
and
claude
committed
d12bcff
fix(genomeGenerate): STAR-faithful genomeParameters.txt and Log.out

rob-p
and
claude
committed
814d7ce
fix(windows): avoid Log.out sharing violation in genomeGenerate

rob-p
and
claude
committed
272615c